| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 1,298,911 | Δ5,910 bp | [oppA]–[cls] | [oppA], oppB, oppC, oppD, oppF, yciU, [cls] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1298911 | 1304820 | 5910 | 52 [3] | [0] 47 | [oppA]–[cls] | [oppA],oppB,oppC,oppD,oppF,yciU,[cls] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1298910 | 3 (0.060) | 46 (0.930) | 34/150 | 0.4 | 96.8% | coding (135/1632 nt) | oppA | oligopeptide transporter subunit |
| ? | REL606 | 1304821 = | 0 (0.000) | coding (1419/1461 nt) | cls | cardiolipin synthetase | |||||
GGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1298836‑1298910‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCTGAAC > REL606/1304821‑1304895 GGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATA < 1:1294382/76‑1 CGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCA < 2:966835/76‑1 GCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAA > 1:199770/1‑76 CTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAAT < 1:1019996/76‑1 CTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAAT > 1:1373946/1‑76 CTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAAT > 1:1497582/1‑76 TGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATG < 1:55721/76‑1 TGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATG < 1:1321195/76‑1 TGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATG > 1:1536433/1‑76 TGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATG > 1:791077/1‑76 CAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGAC > 1:1190258/1‑76 TGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTT > 1:668828/1‑76 GATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTT > 1:535398/1‑76 GATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTT < 2:535398/76‑1 GATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTT > 2:1035927/1‑76 GATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTT < 2:1202546/76‑1 GATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTT < 2:1374815/76‑1 GATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTT < 2:480675/76‑1 GATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTT > 1:1202546/1‑76 GTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGC < 2:1174547/76‑1 ACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGCCA > 1:1536696/1‑76 TCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCAT < 2:745445/76‑1 TCACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGGTTTAGCCATAAACGGGCAT < 2:745442/76‑1 CACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATC < 2:235657/76‑1 ACACTGGCGGAAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCG > 1:462877/1‑76 GGCGGAAAAACAAACCCTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAG < 2:633469/76‑1 CGGAAAAACGAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGAC < 2:1476121/76‑1 AAAAACAAGCCCTGGTACGTGACAATACGTTGCCATAAGGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTG < 2:69763/76‑1 AAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTG > 1:1338219/1‑76 AAAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTG > 2:578427/1‑76 AAAACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGA > 1:159680/1‑76 AACAAACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAAC < 2:794130/76‑1 AACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGA < 2:564034/76‑1 ACACTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAA > 2:52988/1‑76 ACTGGTACGTAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAAT > 1:1258893/1‑76 tgtTACGTAACAATACGTTGCCATAATGAACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATAT < 1:135472/73‑1 CGTAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCG < 1:1159029/76‑1 TAACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTC > 1:234474/1‑76 AACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCC < 2:1378829/76‑1 ACAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCT > 1:887671/1‑76 aAATACGTTGCCATAAGGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCTG < 2:1097543/75‑1 CAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCTG > 2:1316084/1‑76 CAATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCTG < 2:1159189/76‑1 AATACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCTGA > 1:1172273/1‑76 TACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCTGAAC > 2:736368/1‑76 TACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCTGAAC < 1:271483/76‑1 GGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1298836‑1298910‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATATAATCGTCCTGAAC > REL606/1304821‑1304895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |