| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 1,298,911 | Δ5,910 bp | [oppA]–[cls] | [oppA], oppB, oppC, oppD, oppF, yciU, [cls] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1298911 | 1304820 | 5910 | 52 [3] | [0] 47 | [oppA]–[cls] | [oppA],oppB,oppC,oppD,oppF,yciU,[cls] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1298910 | 3 (0.060) | 46 (0.930) | 34/150 | 0.4 | 96.8% | coding (135/1632 nt) | oppA | oligopeptide transporter subunit |
| ? | REL606 | 1304821 = | 0 (0.000) | coding (1419/1461 nt) | cls | cardiolipin synthetase | |||||
AGGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATGGTTCAGAAGTTCAGTCATTAGATCCGCACAAAATTGAAGGTGTTCCGGAGTCTAATATCAGCCGAGACCTGTTT > REL606/1298835‑1298985 | aGGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAAt > 2:579941/1‑76 (MQ=255)aGGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAAt > 1:953875/1‑76 (MQ=255)aGGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAAt > 2:1263085/1‑76 (MQ=255) gggAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATa < 1:1294382‑M1/76‑2 (MQ=255) gTCGCGCTGGCAGCTGATGTACCCACAGGCGTTACACTGGCGGAAAAACAAACACTGGTACGTAACAATGGTTCAg < 1:1428565/76‑1 (MQ=255) cgcgCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgcca < 2:966835‑M1/76‑10 (MQ=255) gcTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataa > 1:199770‑M1/1‑64 (MQ=255) cTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataat > 1:1373946‑M1/1‑63 (MQ=255) cTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataat < 1:1019996‑M1/76‑14 (MQ=255) cTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataat > 1:1497582‑M1/1‑63 (MQ=255) tGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatg < 1:1321195‑M1/76‑15 (MQ=255) tGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatg > 1:1536433‑M1/1‑62 (MQ=255) tGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatg > 1:791077‑M1/1‑62 (MQ=255) tGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatg < 1:55721‑M1/76‑15 (MQ=255) cAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggac > 1:1190258‑M1/1‑59 (MQ=255) tGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacgttt > 1:668828‑M1/1‑55 (MQ=255) gATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacgtttt > 2:1035927‑M1/1‑54 (MQ=255) gATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacgtttt < 2:1374815‑M1/76‑23 (MQ=255) gATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacgtttt < 2:1202546‑M1/76‑23 (MQ=255) gATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacgtttt < 2:480675‑M1/76‑23 (MQ=255) gATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacgtttt < 2:535398‑M1/76‑23 (MQ=255) gATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacgtttt > 1:1202546‑M1/1‑54 (MQ=255) gATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacgtttt > 1:535398‑M1/1‑54 (MQ=255) tGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATGGTTCAGAAGTTCAGTCATTAGAt < 2:1295467/76‑1 (MQ=255) gTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacgttttagc < 2:1174547‑M1/76‑26 (MQ=255) aCCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacgttttagcca > 1:1536696‑M1/1‑49 (MQ=255) aGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATGGTTCAGAAGTTCAGTCATTAGATCCGCACaaa < 2:692054/76‑1 (MQ=255) tCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacgttttagccataaacgggcat < 2:745445‑M1/76‑39 (MQ=255) tCACACTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacggtttagccataaacgggcat < 2:745442‑M1/76‑39 (MQ=255) cacaCTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacgttttagccataaacgggcatc < 2:235657‑M1/76‑40 (MQ=255) acacTGGCGGAAAAACAAACACTGGTACGTAACAATacgttgccataatggacgttttagccataaacgggcatcg > 1:462877‑M1/1‑36 (MQ=255) ggCGGAAAAACAAACCCTGGTACGTAACAATacgttgccataatggacgttttagccataaacgggcatcgagcag < 2:633469‑M1/76‑46 (MQ=255) cGGAAAAACGAACACTGGTACGTAACAATacgttgccataatggacgttttagccataaacgggcatcgagcagac < 2:1476121‑M1/76‑48 (MQ=255) aaaaaCAAGCCCTGGTACGTGACAATacgttgccataagggacgttttagccataaacgggcatcgagcagacgtg < 2:69763‑M1/76‑51 (MQ=255) aaaaaCAAACACTGGTACGTAACAATacgttgccataatggacgttttagccataaacgggcatcgagcagacgtg > 1:1338219‑M1/1‑26 (MQ=255) aaaaaCAAACACTGGTACGTAACAATacgttgccataatggacgttttagccataaacgggcatcgagcagacgtg > 2:578427‑M1/1‑26 (MQ=255) aaaaCAAACACTGGTACGTAACAATacgttgccataatggacgttttagccataaacgggcatcgagcagacgtga > 1:159680‑M1/1‑25 (MQ=255) aacaaacaCTGGTACGTAACAATacgttgccataatggacgttttagccataaacgggcatcgagcagacgtgaac < 2:794130‑M1/76‑54 (MQ=255) aacaCTGGTACGTAACAATacgttgccataatggacgttttagccataaacgggcatcgagcagacgtgaacgcga < 2:564034‑M1/76‑58 (MQ=255) acacTGGTACGTAACAATacgttgccataatggacgttttagccataaacgggcatcgagcagacgtgaacgcgaa > 2:52988‑M1/1‑18 (MQ=255) acTGGTACGTAACAATacgttgccataatggacgttttagccataaacgggcatcgagcagacgtgaacgcgaaat > 1:1258893‑M1/1‑16 (MQ=255) tgttacgTAACAATacgttgccataatgaacgttttagccataaacgggcatcgagcagacgtgaacgcgaaatat < 1:135472‑M1/73‑63 (MQ=255) cGTAACAATacgttgccataatggacgttttagccataaacgggcatcgagcagacgtgaacgcgaaatataatcg < 1:1159029‑M1/76‑68 (MQ=255) tAACAATacgttgccataatggacgttttagccataaacgggcatcgagcagacgtgaacgcgaaatataatcgtc > 1:234474‑M1/1‑7 (MQ=255) aaCAATacgttgccataatggacgttttagccataaacgggcatcgagcagacgtgaacgcgaaatataatcgtcc < 2:1378829‑M1/76‑71 (MQ=255) aCAATacgttgccataatggacgttttagccataaacgggcatcgagcagacgtgaacgcgaaatataatcgtcct > 1:887671‑M1/1‑5 (MQ=255) cAATacgttgccataatggacgttttagccataaacgggcatcgagcagacgtgaacgcgaaatataatcgtcctg < 2:1159189‑M1/76‑73 (MQ=255) cAATacgttgccataatggacgttttagccataaacgggcatcgagcagacgtgaacgcgaaatataatcgtcctg > 2:1316084‑M1/1‑4 (MQ=255) aaatacgttgccataagggacgttttagccataaacgggcatcgagcagacgtgaacgcgaaatataatcgtcctg < 2:1097543‑M1/75‑73 (MQ=255) aaTacgttgccataatggacgttttagccataaacgggcatcgagcagacgtgaacgcgaaatataatcgtcctga > 1:1172273‑M1/1‑3 (MQ=255) tacgttgccataatggacgttttagccataaacgggcatcgagcagacgtgaacgcgaaatataatcgtcctgaac > 2:736368‑M1/1‑1 (MQ=255) tacgttgccataatggacgttttagccataaacgggcatcgagcagacgtgaacgcgaaatataatcgtcctgaac < 1:271483‑M1/76‑76 (MQ=255) | AGGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACACTGGTACGTAACAATGGTTCAGAAGTTCAGTCATTAGATCCGCACAAAATTGAAGGTGTTCCGGAGTCTAATATCAGCCGAGACCTGTTT > REL606/1298835‑1298985 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |