| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2040012 = | 32 (0.650) | 6 (0.140) | 6/132 | 4.5 | 16.2% | coding (117/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040259 = | 34 (0.780) | intergenic (‑131/+12) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CACGATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACA‑TTTCATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2040095‑2040012‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑a‑tttcatctAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATA > REL606/2040259‑2040333 CACGATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACA < 1:859674/76‑1 TATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACA‑TTTCAT < 1:1356453/76‑1 CATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACA‑TTTCATCTAAAT < 2:652010/76‑1 TAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACATTTTCATCTAAATAGG < 2:572340/76‑1 TAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACA‑TTTCATCTAAATAGGC < 2:641577/76‑1 TTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACA‑TTTCATCTAAATAGGCCATATCACATCTTACCCAATA < 2:1112914/76‑1 AAGGAAAAGTAACTATATCTGACTACGCAAACA‑TTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATT < 2:347914/76‑1 GTAACTATATCTGACTACGCAAACA‑TTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATT < 2:147434/76‑1 TTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAAT < 1:1168308/76‑1 TTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAAT < 1:1168328/76‑1 TCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCT > 2:1178990/1‑76 TAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATA < 1:383561/76‑1 TAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATA < 1:383564/76‑1 TAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATA < 1:383591/76‑1 CACGATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAACA‑TTTCATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2040095‑2040012‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑a‑tttcatctAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATA > REL606/2040259‑2040333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |