| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2040012 = | 32 (0.650) | 6 (0.140) | 6/132 | 4.5 | 16.2% | coding (117/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040259 = | 34 (0.780) | intergenic (‑131/+12) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAATATACCGCTATATGAA > REL606/2039942‑2040085 | cACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGa > 1:79770/1‑76 (MQ=255) tGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATg < 1:63551/76‑1 (MQ=255) tGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATg < 1:63570/76‑1 (MQ=255) tGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATg < 1:63585/76‑1 (MQ=255) tGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAg > 1:1584335/1‑76 (MQ=255) aTTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCa < 1:600902/76‑1 (MQ=255) aggcATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGat > 2:1430133/4‑76 (MQ=255) aGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGat > 1:1413512/1‑76 (MQ=255) aGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGat > 1:29859/1‑76 (MQ=255) gACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGata < 1:838078/76‑1 (MQ=255) gACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGata < 1:838088/76‑1 (MQ=255) gACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGata > 2:1503356/1‑76 (MQ=255) gACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTAGAGATGAAATGTTTGCGTAGTCAGata < 1:838098/76‑1 (MQ=255) aCATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGatat < 1:1015616/76‑1 (MQ=255) cATATAATTGCCAGAATAATCGTCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGAtata < 1:636788/76‑1 (MQ=255) ataATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGtt < 1:642446/76‑1 (MQ=255) gaaTTGCGAGAATAGTCGTCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTa < 1:1521275/75‑1 (MQ=255) aaTTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTAc < 1:1302132/76‑1 (MQ=255) ttGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACtt < 1:895632/76‑1 (MQ=255) tGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACttt < 1:1435551/76‑1 (MQ=255) ataatCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTg > 1:583583/1‑76 (MQ=255) taatCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGc > 1:180198/1‑76 (MQ=255) catcGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaat < 1:387043/76‑1 (MQ=255) tcGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaataa > 1:67122/1‑76 (MQ=255) tcGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaataa < 1:244106/76‑1 (MQ=255) tcGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaataa < 1:244087/76‑1 (MQ=255) tcGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaataa > 1:1341435/1‑76 (MQ=255) tcGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaataa > 1:1341424/1‑76 (MQ=255) tGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTggagc < 2:156449/76‑2 (MQ=255) atTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAATATACCg < 1:517126/76‑1 (MQ=255) agaCTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAATATACCGCtat < 2:20805/76‑1 (MQ=255) cGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAATATACCGCTATATGaa < 1:292666/76‑1 (MQ=255) | CACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAATATACCGCTATATGAA > REL606/2039942‑2040085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |