| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3737859 = | 62 (1.250) | 13 (0.290) | 5/136 | 5.0 | 18.2% | intergenic (‑33/+13) | waaL/waaV | Lipid A‑core, surface polymer ligase/putative beta1,3‑glucosyltransferase |
| ? | REL606 | 3738439 = | 61 (1.360) | coding (417/984 nt) | waaV | putative beta1,3‑glucosyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAGCATCAAAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3737939‑3737859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattaaaCTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCCACAATAAATCGCATCC > REL606/3738439‑3738511 tgtCATCAAAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCA > 2:1042988/4‑76TAGCATCAAAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCA < 2:813548/76‑1 CATCAAAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTA > 2:997070/1‑76 ATCAAAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAA < 1:205953/76‑1 AAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAACTC < 2:1243308/76‑1 AAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAACTC < 2:1243317/76‑1 AAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAACTC < 2:1243338/76‑1 ATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAACTCTGTATTT < 2:498288/76‑1 ATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAACTCTGTATTT < 2:498293/76‑1 ATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAACTCTGTATTT < 2:657689/76‑1 ATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAACTCTGTATTT < 2:657705/76‑1 GGATGGTAAGACTGTTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAACGCTGTATATATAGGTGAGTAA < 2:1045479/76‑1 GGAGGGTAAGACGGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAACTCTGTATTTATAGGTGAGTAA < 2:1045504/76‑1 ATGGTAAGACTGTTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAACTCTGTATTTATAGGTGAGTAAGT < 2:658838/76‑1 ATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAACTCTGTATTTATAGGTGAGTAAGT < 2:658820/76‑1 GTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTT < 2:1260022/76‑1 GTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTT < 2:1260009/76‑1 TAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCCACAATAAATCGCATC > 2:176100/1‑76 AAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCCACAATAAATCGCATCC < 1:616431/76‑1 TAGCATCAAAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3737939‑3737859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattaaaCTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCCACAATAAATCGCATCC > REL606/3738439‑3738511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |