| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3737859 = | 62 (1.250) | 13 (0.290) | 5/136 | 5.0 | 18.2% | intergenic (‑33/+13) | waaL/waaV | Lipid A‑core, surface polymer ligase/putative beta1,3‑glucosyltransferase |
| ? | REL606 | 3738439 = | 61 (1.360) | coding (417/984 nt) | waaV | putative beta1,3‑glucosyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCTTATAAACAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCCACAATAAATCGCATCC > REL606/3738364‑3738511 | tCTTATAAACAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAAc < 1:1439078/76‑1 (MQ=255) ttATAAACAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAActc < 1:1243308/76‑1 (MQ=255) ttATAAACAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAActc < 1:1243317/76‑1 (MQ=255) ttATAAACAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAActc < 1:1243338/76‑1 (MQ=255) ttATAAACAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAActc > 2:1100250/1‑76 (MQ=255) aaaCAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTa > 1:1583752/1‑76 (MQ=255) aaCAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTAt < 2:368129/76‑1 (MQ=255) aCAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTAtt < 2:191839/76‑1 (MQ=255) cAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTAttt < 1:498288/76‑1 (MQ=255) cAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTAttt < 1:498293/76‑1 (MQ=255) cAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTAttt < 1:657689/76‑1 (MQ=255) cAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTAttt < 1:657705/76‑1 (MQ=255) aaGCACCCTATATGGAATCTAACCTTTTTATAAAAAACGTCGAAACTTAAAGCTCCTTCATTCAACTCTGTATTta > 2:788372/1‑76 (MQ=255) aaGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTta > 1:1539184/1‑76 (MQ=255) aaGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTta > 2:788357/1‑76 (MQ=255) aGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTtat < 1:23835/76‑1 (MQ=255) gCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTtata < 2:1222198/76‑1 (MQ=255) ccTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTg < 2:230087/76‑1 (MQ=255) ccTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTg > 1:147537/1‑76 (MQ=255) cTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGa > 2:409738/1‑76 (MQ=255) cTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGa < 2:626954/76‑1 (MQ=255) tataTGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGag > 2:713568/1‑76 (MQ=255) atGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGagtaa < 1:1045479/76‑1 (MQ=255) atGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGagtaa < 1:1045504/76‑1 (MQ=255) atGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGagtaa < 1:1479936/76‑1 (MQ=255) tGGAATCTACCCTTTTTAAAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGagtaag < 1:702718/76‑1 (MQ=255) tGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGagtaag < 1:1511643/76‑1 (MQ=255) ggAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGagtaagt < 1:289523/76‑1 (MQ=255) ggAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGagtaagt < 2:654256/76‑1 (MQ=255) ggAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGagtaagt > 1:1000536/1‑76 (MQ=255) ggAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGagtaagt < 1:658838/76‑1 (MQ=255) ggAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGagtaagt < 1:658820/76‑1 (MQ=255) aaTCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAgtaagtaa < 1:1197750/76‑1 (MQ=255) aTCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAac > 1:206025/1‑76 (MQ=255) cTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAacac > 2:1535340/1‑76 (MQ=255) cTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAacac > 1:1372428/1‑76 (MQ=255) aaCCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCa > 2:70238/1‑76 (MQ=255) aaCCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCa > 2:722069/1‑76 (MQ=255) aCCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAACTAACACCAt < 1:1362954/76‑1 (MQ=255) ttttATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCttt < 1:1260009/76‑1 (MQ=255) gtttAGAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCttt < 1:1260022/75‑1 (MQ=255) tataAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTtat > 1:20374/1‑76 (MQ=255) tataAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTtat > 2:922642/1‑76 (MQ=255) ataAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTtata > 1:34202/1‑76 (MQ=255) cGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATa > 1:1085626/1‑76 (MQ=255) cGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATa > 1:82318/1‑76 (MQ=255) cGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATa < 1:333341/76‑1 (MQ=255) gAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATaa < 1:345861/76‑1 (MQ=255) aaaaGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATaaa < 2:1166835/76‑1 (MQ=255) aaaaGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATaaa < 2:612952/76‑1 (MQ=255) aaaaGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATaaa < 1:1560361/76‑1 (MQ=255) gTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGccc > 1:852029/1‑76 (MQ=255) tAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCca < 2:1492167/76‑1 (MQ=255) tAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCca < 2:1492156/76‑1 (MQ=255) tAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCca > 1:552252/1‑76 (MQ=255) tAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCca > 1:361009/1‑76 (MQ=255) aGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCCACaa > 1:1184628/1‑76 (MQ=255) gATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCCACAAt < 2:952136/76‑1 (MQ=255) ccTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCCACAATaaa < 1:1381784/76‑1 (MQ=255) cTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCCACAATAAAt > 1:1258532/1‑76 (MQ=255) tCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCCACAATAAATCg > 1:18803/1‑76 (MQ=255) tAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCCACAATAAATCGCATc > 2:176100/1‑76 (MQ=255) aaaCTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCCACAATAAATCGCATcc < 1:616431/76‑1 (MQ=255) | TCTTATAAACAAGCACCCTATATGGAATCTAACCTTTTTATAAAAAAAGTCGAAAAGTAAAGATCCTTCATTAAACTCTGTATTTATAGGTGAGTAAGTAACACCATCTTTTATATAATGGCCATAAAGCCCACAATAAATCGCATCC > REL606/3738364‑3738511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |