New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2042274	67 (1.290)	13 (0.280)	6/134	4.6	19.6%	coding (547/1428 nt)	wzx	O antigen translocase (Wzx)
	?	REL606	= 2042743	47 (1.020)					coding (78/1428 nt)	wzx	O antigen translocase (Wzx)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2042193‑2042274 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacaattATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTATTTCT  <  REL606/2042743‑2042669                                                                                                                                                               ATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAAT                                                                                   <  1:763596/76‑1   aAAAATAGTTTTTTGAATGTTTCATAGCAAAATGTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATAC                                                                                 <  1:804599/75‑1   GAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATAC                                                                                 <  1:3321/76‑1   GAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATAC                                                                                 <  1:3330/76‑1   GAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATAC                                                                                 <  1:3342/76‑1    AAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACA                                                                                <  1:1399593/76‑1     AAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAA                                                                               <  1:830188/76‑1      AATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAAT                                                                              <  1:852944/76‑1      AATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAAT                                                                              <  1:852958/76‑1                                                         TTATAAATATTCAGTACAATACAATTCTTATTAATGTTGTCTTTGGGTAGGGCTCTTGGCCCAAGCTCTTTTGGct                           >  2:1004766/1‑74                                                          TATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTA                          >  2:169877/1‑76                                                          TATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTA                          >  2:169848/1‑76                                                          TATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTA                          >  2:169850/1‑76                                                           ATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTAT                         >  2:979088/1‑76                                                               ATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTCTGTTG                     >  2:814587/1‑76                                                               ATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTG                     >  2:814601/1‑76                                                                TATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGG                    >  2:140174/1‑76                                                                    CAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATG                >  2:352425/1‑76                                                                    CAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATG                >  2:352428/1‑76                                                                    CAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATG                >  2:669028/1‑76                                                                    CAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATG                >  2:669043/1‑76                                                                    CAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATG                >  2:669045/1‑76                                                                                  TATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTATTTCT  >  1:473827/1‑76                                                                                                                                                               ATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2042193‑2042274 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacaattATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTATTTCT  <  REL606/2042743‑2042669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.