New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2042274	67 (1.290)	13 (0.280)	6/134	4.6	19.6%	coding (547/1428 nt)	wzx	O antigen translocase (Wzx)
	?	REL606	= 2042743	47 (1.020)					coding (78/1428 nt)	wzx	O antigen translocase (Wzx)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGAAATAAAGTTAGCATACCAACATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTGGCTAGTTTGTTATTCATC  >  REL606/2042669‑2042818                                                                           |                                                                            aGAAATAAAGTTAGCATACCAACATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATtaataata                                                                            <  1:473827/76‑1 (MQ=255)         aGTTAGCATACCAACATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATg                                                                    <  1:1618080/76‑1 (MQ=255)           ttAGCATACCAACATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGc                                                                  >  2:534997/1‑76 (MQ=255)             aGCATACCAACATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCtt                                                                >  2:1228732/1‑76 (MQ=255)             aGCATACCAACATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCtt                                                                >  2:1385113/1‑76 (MQ=255)             aGCATACCAACATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCtt                                                                >  2:663427/1‑76 (MQ=255)             aGCATACCAACATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCtt                                                                <  2:924143/76‑1 (MQ=255)             aGCATACCAACATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCtt                                                                <  1:1508837/76‑1 (MQ=255)              gCATACCAACATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTg                                                               <  2:1428267/76‑1 (MQ=255)              gCATACCAACATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTg                                                               <  1:671121/76‑1 (MQ=255)                 tACCAACATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGt                                                            >  2:501914/1‑76 (MQ=255)                     aaCATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCt                                                        >  1:354739/1‑76 (MQ=255)                     aaCATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCt                                                        <  1:83944/76‑1 (MQ=255)                           aCCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCtt                                                  <  1:684469/76‑1 (MQ=255)                             cAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTc                                                >  1:256533/1‑76 (MQ=255)                              aaaaGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCa                                               >  1:439205/1‑76 (MQ=255)                                    gCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATtgtg                                         >  1:777132/1‑76 (MQ=255)                                          tCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCat                                   <  1:583682/76‑1 (MQ=255)                                          tCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCat                                   >  2:711537/1‑76 (MQ=255)                                           ccAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCata                                  <  2:748365/76‑1 (MQ=255)                                           ccAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCata                                  >  2:1305015/1‑76 (MQ=255)                                               gAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCAtaataa                              >  2:433811/1‑76 (MQ=255)                                               gAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCAtaataa                              >  2:433820/1‑76 (MQ=255)                                                aaCCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATaataat                             <  2:170561/76‑1 (MQ=255)                                                aaCCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATaataat                             >  2:1656845/1‑76 (MQ=255)                                                 aCCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATc                            >  2:1081658/1‑76 (MQ=255)                                                  cccTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATcc                           >  1:1544275/1‑76 (MQ=255)                                                        ctaaaTACAACAGTAATGTTATTTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCt                     <  1:315387/74‑1 (MQ=255)                                                        ccAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCt                     <  1:1363091/76‑1 (MQ=255)                                                        ccAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCt                     <  1:315365/76‑1 (MQ=255)                                                        ccAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCt                     <  1:890412/76‑1 (MQ=255)                                                        ccAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCt                     >  1:654694/1‑76 (MQ=255)                                                         cAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCtn                    <  1:166229/76‑2 (MQ=255)                                                         cAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTg                    <  1:1098462/76‑1 (MQ=255)                                                         cAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTg                    <  1:795487/76‑1 (MQ=255)                                                          aaaTACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTgg                   <  1:369169/76‑1 (MQ=255)                                                             tACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTGGCTa                >  1:758939/1‑76 (MQ=255)                                                              acaacaTTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTGGCTAg               <  2:642866/76‑1 (MQ=255)                                                              acaacaTTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTGGCTAg               <  2:1317014/76‑1 (MQ=255)                                                               caacaTTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTGGCTAGt              >  2:615854/1‑76 (MQ=255)                                                                 ctaTTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTGGCTAGttt            >  2:1000755/3‑76 (MQ=255)                                                                 ctaTTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTGGCTAGttt            >  2:57594/3‑76 (MQ=255)                                                                  caTTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATCATCATCCTTGCCTGGCTCGTTTg           >  2:269566/1‑76 (MQ=255)                                                                  caTTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTGGCTAGTTTg           >  2:269577/1‑76 (MQ=255)                                                                   aTTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTGGCTAGTTTGt          <  2:633959/76‑1 (MQ=255)                                                                    ttAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTGGCTAGTTTGtt         <  2:1183651/76‑1 (MQ=255)                                                                           taatTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTGGCTAGTTTGTTATtcatc  >  2:1308651/1‑76 (MQ=255)                                                                           taatTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTGGCTAGTTTGTTATtcatc  >  1:1503665/1‑76 (MQ=255)                                                                           |                                                                            AGAAATAAAGTTAGCATACCAACATAACCAAAAGAGCTTGGTCCAAGAACCCTACCCAAATACAACATTAATAATAATTGTATGGCTTGCGTTCCTAGCCTTTCAATTGTGCTCCATAATAATCCTTGCCTGGCTAGTTTGTTATTCATC  >  REL606/2042669‑2042818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.