| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3737289 = | 85 (1.640) | 6 (0.130) | 6/138 | 4.7 | 6.6% | coding (538/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | 3737758 = | 92 (1.930) | coding (69/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3737366‑3737289‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaaAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATATT > REL606/3737758‑3737831 TTGACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATC < 1:1267366/76‑1TTGACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATC < 1:472591/76‑1TTGACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATC < 1:835754/76‑1 GACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAA < 1:159611/76‑1 TCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAAAGAAAAAATACATAA < 2:269433/76‑1 TTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAAAGAAAAAATACATAATATGA < 2:859127/76‑1 CCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAAAGAAAAAATACATAATATGAGAA < 2:1232962/76‑1 TACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAAAGAAAAAATACATAATATGAGAATTAAAG < 2:1520558/76‑1 CATCATCCTTTTCCCTTCTTTACTGGCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAAT < 2:1493509/76‑1 TCTTTACTGGCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAGCA < 2:554256/76‑1 CATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATA > 2:523081/1‑76 ATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATAT < 1:676968/76‑1 CAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATAT > 2:1635888/1‑76 AAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATATT < 1:846242/76‑1 TTGACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3737366‑3737289‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaaAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATATT > REL606/3737758‑3737831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |