New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	3737289 =	85 (1.640)	6 (0.130)	6/138	4.7	6.6%	coding (538/1254 nt)	waaL	Lipid A‑core, surface polymer ligase
	?	REL606	3737758 =	92 (1.930)					coding (69/1254 nt)	waaL	Lipid A‑core, surface polymer ligase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATATTTT  >  REL606/3737685‑3737833                                                                          |                                                                            aCAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGa                                                                           <  1:56167/76‑1 (MQ=255)       cAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAAt                                                                     >  1:1377836/1‑76 (MQ=255)       cAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAAt                                                                     >  1:937108/1‑76 (MQ=255)       cAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAAt                                                                     >  1:412654/1‑76 (MQ=255)       cAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAAt                                                                     >  1:1471823/1‑76 (MQ=255)       cAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAAt                                                                     >  1:182779/1‑76 (MQ=255)        aGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATa                                                                    <  1:459945/76‑1 (MQ=255)        aGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATa                                                                    <  1:1223942/76‑1 (MQ=255)        aGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATa                                                                    <  2:194933/76‑1 (MQ=255)        aGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATa                                                                    >  1:1612055/1‑76 (MQ=255)        aGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATa                                                                    >  1:1083324/1‑76 (MQ=255)           tataATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACat                                                                 <  1:482824/76‑1 (MQ=255)           tataATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACat                                                                 <  1:896761/76‑1 (MQ=255)            ataATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACata                                                                <  1:499647/76‑1 (MQ=255)            ataATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACata                                                                <  1:353635/76‑1 (MQ=255)            ataATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACata                                                                <  1:1271399/76‑1 (MQ=255)            ataATTCCAGCTGCAGGAAGAAACTGTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACata                                                                <  1:353616/76‑1 (MQ=255)             taATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACataa                                                               <  1:269433/76‑1 (MQ=255)             taATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACataa                                                               <  1:676544/76‑1 (MQ=255)             taATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACataa                                                               <  1:1111177/76‑1 (MQ=255)             taATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACataa                                                               <  1:1437502/76‑1 (MQ=255)             taATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACataa                                                               <  1:869269/76‑1 (MQ=255)              aaTTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACataat                                                              >  1:674906/1‑76 (MQ=255)              aaTTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAAAACataat                                                              >  2:741771/1‑76 (MQ=255)               aTTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACataata                                                             <  1:137133/76‑1 (MQ=255)                ttCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAatat                                                            >  1:1536986/1‑76 (MQ=255)                 tCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATg                                                           >  2:708515/1‑76 (MQ=255)                 tCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATg                                                           >  2:615714/1‑76 (MQ=255)                  ccAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATga                                                          <  1:859127/76‑1 (MQ=255)                    aGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATgaga                                                        >  1:178077/1‑76 (MQ=255)                     gCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGaa                                                       <  1:1232962/76‑1 (MQ=255)                        gCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAAttn                                                    <  1:1085395/76‑2 (MQ=255)                        gCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTa                                                    <  1:1208052/76‑1 (MQ=255)                        gCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTa                                                    <  1:1174312/76‑1 (MQ=255)                         cATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTaa                                                   >  2:1124650/1‑76 (MQ=255)                         cATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTaa                                                   <  2:1611366/76‑1 (MQ=255)                          aTGAAGGAGCTTTGTTGCAACATCAGCCCATAAAGACAAAGGCATCAAAGAAAAAATACATAATATGAGAATTaaa                                                  <  1:1481300/76‑1 (MQ=255)                          aTGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTaaa                                                  >  2:1471702/1‑76 (MQ=255)                          aTGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTaaa                                                  <  2:1583387/76‑1 (MQ=255)                           tGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAg                                                 <  1:1649794/76‑1 (MQ=255)                           tGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAg                                                 <  1:665639/76‑1 (MQ=255)                           tGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAg                                                 >  1:1650901/1‑76 (MQ=255)                           tGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAg                                                 <  1:1520558/76‑1 (MQ=255)                            gaagaaACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGa                                                >  1:1369022/1‑76 (MQ=255)                              agaaACTTTGTTGCAACATCATCACATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACt                                              <  2:708607/76‑1 (MQ=255)                               gaaACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACtt                                             >  1:1193415/1‑76 (MQ=255)                                  aCTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTtat                                          <  1:1091891/76‑1 (MQ=255)                                   cTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTtaga                                         <  2:1324276/76‑3 (MQ=255)                                      tgttgCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCa                                      >  1:1181234/1‑76 (MQ=255)                                      tgttgCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCa                                      >  1:1181233/1‑76 (MQ=255)                                       gttgCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATAccgg                                     <  1:105587/76‑3 (MQ=255)                                        ttgCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGa                                    <  1:1168967/76‑1 (MQ=255)                                         tgCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaa                                   >  2:1276065/1‑76 (MQ=255)                                          gCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaat                                  >  2:1096057/1‑76 (MQ=255)                                          gCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaat                                  >  1:26154/1‑76 (MQ=255)                                          gCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaat                                  <  1:1493509/76‑1 (MQ=255)                                          gCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaat                                  <  1:16543/76‑1 (MQ=255)                                          gCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaat                                  <  1:16533/76‑1 (MQ=255)                                            aaCATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaatta                                >  1:187313/1‑76 (MQ=255)                                            aaCATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaatta                                <  2:1441917/76‑1 (MQ=255)                                            aaCATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGaatta                                >  1:187295/1‑76 (MQ=255)                                                tcatcCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAAttt                            >  1:613759/1‑76 (MQ=255)                                                tcatcCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAAttt                            >  1:1170016/1‑76 (MQ=255)                                                 catcCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTc                           <  2:603922/76‑1 (MQ=255)                                                    cccATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCAtt                        <  1:951854/76‑1 (MQ=255)                                                          aaGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCcaaca                  <  1:1219017/76‑1 (MQ=255)                                                          aaGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCcaaca                  >  2:783510/1‑76 (MQ=255)                                                          aaGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCcaaca                  >  2:783529/1‑76 (MQ=255)                                                          aaGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCcaaca                  <  1:554256/76‑1 (MQ=255)                                                          aaGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCcaaca                  <  1:1390248/76‑1 (MQ=255)                                                          aaGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCcaaca                  <  1:1390264/76‑1 (MQ=255)                                                            gACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACaaa                >  2:297978/1‑76 (MQ=255)                                                            gACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACaaa                <  1:1293843/76‑1 (MQ=255)                                                             ncAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACaaaa               >  1:1328431/2‑76 (MQ=255)                                                             aCAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACaaaa               <  1:905284/76‑1 (MQ=255)                                                             aCAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACaaaa               <  2:557217/76‑1 (MQ=255)                                                             aCAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACaaaa               <  1:905274/76‑1 (MQ=255)                                                               aaaGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATg             <  1:1380262/76‑1 (MQ=255)                                                               aaaGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATg             >  2:34980/1‑76 (MQ=255)                                                               aaaGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATg             <  1:1380258/76‑1 (MQ=255)                                                               aaaGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATg             <  2:1566482/76‑1 (MQ=255)                                                               aaaGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATg             <  1:1380275/76‑1 (MQ=255)                                                                aaGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGa            <  1:1472162/76‑1 (MQ=255)                                                                aaGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGa            >  2:1462855/1‑76 (MQ=255)                                                                 aGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGAc           <  1:104588/76‑1 (MQ=255)                                                                   tcatcaAAGAAAAAATCCCTCATATGCGAATTAAAGACTTTATCATAGAATTAATTTCATTCAAACAAAATGCCat         >  1:992663/1‑76 (MQ=255)                                                                   tcatcaAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACat         >  1:1216128/1‑76 (MQ=255)                                                                   tcatcaAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACat         >  1:992691/1‑76 (MQ=255)                                                                   tcatcaAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACat         <  2:642661/76‑1 (MQ=255)                                                                   tcatcaAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACat         >  1:674978/1‑76 (MQ=255)                                                                   tcatcaAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACat         >  1:1165667/1‑76 (MQ=255)                                                                   tcatcaAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACat         >  1:548569/1‑76 (MQ=255)                                                                    catcaAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACata        >  2:523081/1‑76 (MQ=255)                                                                     atcaAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACatat       <  1:676968/76‑1 (MQ=255)                                                                       caAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACatatat     >  2:1635888/1‑76 (MQ=255)                                                                        aaaGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATAtt    <  1:846242/76‑1 (MQ=255)                                                                          aGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATAtttt  <  2:1193415/76‑1 (MQ=255)                                                                          |                                                                            ACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATATTTT  >  REL606/3737685‑3737833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.