| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 3,928,221 | (CACTATGAA)1→2 | coding (5/1260 nt) | rho → | transcription termination factor Rho |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3928213 = | 5 (0.100) | 50 (0.960) | 42/150 | 0.2 | 86.2% | intergenic (+81/‑4) | rhoL/rho | rho operon leader peptide/transcription termination factor Rho |
| ? | REL606 | = 3928221 | 11 (0.210) | coding (5/1260 nt) | rho | transcription termination factor Rho | |||||
CCAGCCCCATATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3928286‑3928213‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAGGATCATCC < REL606/3928221‑3928147 CCAGCCCCATATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTT < 2:251982/76‑1 CCCCATATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATA > 1:1207145/1‑76 CCCCATATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATA < 2:1370754/76‑1 ATATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGG < 2:397311/76‑1 ATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTG > 1:1275245/1‑76 ATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTG > 1:1504868/1‑76 TTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTG < 1:261438/76‑1 GCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTT < 1:1127389/76‑1 CGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCT < 2:247070/76‑1 CGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCT < 2:1631383/76‑1 TGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACT > 2:1392690/1‑76 TGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACT < 1:85690/76‑1 GATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTT < 1:651338/76‑1 ATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTG > 1:536533/1‑76 TCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGG > 1:1623991/1‑76 TCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGG > 1:171394/1‑76 TCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGG < 2:711527/76‑1 CAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGG > 1:1039950/1‑76 GCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGT < 2:1357225/76‑1 CTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTA < 1:331091/76‑1 TCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAA < 2:1031256/76‑1 GAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATC > 1:1121807/1‑76 CCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGA < 1:1125180/76‑1 CCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGA > 2:1536179/1‑76 CGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTT < 1:1457971/76‑1 CGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTT > 2:1380049/1‑76 TTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATG < 2:1358169/76‑1 TTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATG < 1:1113879/76‑1 TTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGT > 1:859045/1‑76 AATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGA > 2:883088/1‑76 AATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGA > 2:426362/1‑76 TTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAAT > 1:1519513/1‑76 TTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAAT > 2:591691/1‑76 TCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATG < 1:799117/76‑1 GTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTA < 2:1462405/76‑1 TAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTAT > 2:879118/1‑76 AAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATG > 2:927681/1‑76 AAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATG > 2:1499504/1‑76 AGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGG > 1:1664457/1‑76 GATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGC < 1:12583/76‑1 GATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGC > 2:60311/1‑76 ATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCA < 2:952434/76‑1 ATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCA > 1:562070/1‑76 TTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAG < 2:36975/76‑1 TTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAG > 2:241626/1‑76 TTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAG < 2:1050335/76‑1 TAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAGGATC < 2:886294/76‑1 AGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAGGGTCA > 2:725884/1‑76 TGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAGGATCATC > 1:1048123/1‑76 GTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAGGATCATCC < 2:1381567/76‑1 CCAGCCCCATATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3928286‑3928213‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAGGATCATCC < REL606/3928221‑3928147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |