New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	3737622 =	48 (0.980)	3 (0.060)	3/144	5.7	6.1%	coding (205/1254 nt)	waaL	Lipid A‑core, surface polymer ligase
	?	REL606	3737741 =	47 (1.000)					coding (86/1254 nt)	waaL	Lipid A‑core, surface polymer ligase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3737699‑3737622 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCC  >  REL606/3737741‑3737813                                                                                                                                                         TTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTC                                                                             <  1:1463678/76‑1        TGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCCCATAAAGA                                                                      <  2:1249741/76‑1                          GACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCATAAAGATAAAGTCATCAAAGAAAA                                                    <  2:343586/76‑1                                  AAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCATAAAGACAAAGTCATCAAAGAAAAAAAACATA                                            <  2:1464618/76‑1                                                                            CATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCC  <  1:746248/76‑1                                                                            CATAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCC  <  2:738191/76‑1                                                                                                                                                         TTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3737699‑3737622 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catAAAGACAAAGTCATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCC  >  REL606/3737741‑3737813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.