| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3737622 = | 48 (0.980) | 3 (0.060) | 3/144 | 5.7 | 6.1% | coding (205/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | 3737741 = | 47 (1.000) | coding (86/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGCATTGGTATAAACAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATA > REL606/3737547‑3737696 | atGCATTGGTATAAACAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATaa < 1:1378271/76‑1 (MQ=255) gCATTGGTATAAACAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATg < 2:885156/76‑1 (MQ=255) ttGGTATAAACAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATgaga > 2:127081/1‑76 (MQ=255) ttGGTATAAACAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATgaga > 1:1298615/1‑76 (MQ=255) tGGTATAAACAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGAt > 2:1049818/1‑76 (MQ=255) tGGTATAAACAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGAt > 1:1278960/1‑76 (MQ=255) ggTATAAACAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATg < 1:1031142/76‑1 (MQ=255) ggTATAAACAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATg < 1:1031159/76‑1 (MQ=255) ggTATAAACAGAGCCCGAAACTTTAGAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATg < 1:1031125/76‑1 (MQ=255) ataAACAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGaaa > 2:1171475/1‑76 (MQ=255) aCAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTa < 1:544952/76‑1 (MQ=255) aCAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTa > 2:1294022/1‑76 (MQ=255) aCAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTa < 2:1076186/76‑1 (MQ=255) gaacccGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACa > 2:1015741/4‑76 (MQ=255) gCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACaaa < 2:1527974/76‑1 (MQ=255) ccGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGt < 1:1333698/76‑1 (MQ=255) ccGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGt < 2:468917/76‑1 (MQ=255) cGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTa > 2:323396/1‑76 (MQ=255) aaaCTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAgg > 2:64685/1‑76 (MQ=255) aaaCTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAgg > 2:108415/1‑76 (MQ=255) aaaCTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAgg > 2:108412/1‑76 (MQ=255) ttATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGattat > 1:1490345/1‑76 (MQ=255) ttATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGattat > 2:352277/1‑76 (MQ=255) ttATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGattat > 1:1490359/1‑76 (MQ=255) ttATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGattat < 2:1261775/76‑1 (MQ=255) ttATAATGCGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGattat > 1:254265/1‑76 (MQ=255) ataATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGAttatta < 2:1336435/76‑1 (MQ=255) aTGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGtt > 1:202174/1‑76 (MQ=255) tgtgAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTa > 2:781342/1‑76 (MQ=255) gtgAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGtagg < 2:1115956/76‑4 (MQ=255) gtgAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTAt > 1:1371010/1‑76 (MQ=255) tgAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTAtt > 2:1316444/1‑76 (MQ=255) tACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGttt > 2:362109/1‑76 (MQ=255) cAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGtttttt < 1:809603/76‑1 (MQ=255) cAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGtttttt < 1:809591/76‑1 (MQ=255) gatgatATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGtttttttt < 2:1386655/76‑1 (MQ=255) atatTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGgtg > 1:1139847/1‑76 (MQ=255) ttATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCAt < 2:1371009/76‑1 (MQ=255) aTTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGaa > 1:231687/1‑76 (MQ=255) aTTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGaa > 2:1298831/1‑76 (MQ=255) cccAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAAt < 2:1427279/76‑1 (MQ=255) cccAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAAt < 2:181057/76‑1 (MQ=255) cAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATAc < 1:587556/76‑1 (MQ=255) aaaGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACaa < 1:389476/76‑1 (MQ=255) aaaGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACaa > 2:1369197/1‑76 (MQ=255) aTAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGa > 1:82900/1‑76 (MQ=255) aTAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGa > 1:193381/1‑76 (MQ=255) aaTGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGata < 2:1461085/76‑1 (MQ=255) | ATGCATTGGTATAAACAGAGCCCGAAACTTTATAATGTGAATACCAGATGATATTTATGATTCCCAAAAGACATAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATA > REL606/3737547‑3737696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |