| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 570024 = | 9 (0.230) | 4 (0.120) | 3/132 | 5.1 | 18.6% | intergenic (‑88/+591) | yhhI/ECB_00526 | predicted transposase/hypothetical protein |
| ? | REL606 | = 719050 | 27 (0.780) | coding (66/762 nt) | ybfD | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTAACATGATGCCTGGATATTAACCAGGAAAAGATCATCAGAAGTTCACTTTTTGTACTAAATAATTCGCATTTTATGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/570104‑570024‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatgtttCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTTTTTAAGTTCCATTTTGTTCTC < REL606/719050‑718976 GTAACATGATGCCTGGATATTAACCAGGAAAAGATCATCAGAAGTTCACTTTTTGTACTAAATAATTCGCATTTTA > 1:354536/1‑76GTAACATGATGCCTGGATATTAACCAGGAAAAGATCATCAGAAGTTCACTTTTTGTACTAAATAATTCGCATTTTA > 1:354551/1‑76 TAACATGATGCCTGGATATTAACCAGGAAAAGATCATCAGAAGTTCACTTTTTGTACTAAATAATTCGCATTTTAT > 2:165906/1‑76 TTTTGTACTAAATAATTCGCATTTTATGTTCCACTTTCCAGGGTTGTCTGTAATCGGGGATAATAGAAATATGTTC > 2:827240/1‑76 TTGTACTAAATAATTCGCATTTTATGTTTCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCA > 2:394318/1‑76 AAATAATTCGCATTTTATGTTTCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTT > 2:641218/1‑76 AAATAATTCGCATTTTATGTTTCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTT > 2:641207/1‑76 TTATGTTTCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTTTTTAAGTTCCATTT < 1:736117/76‑1 TTATGTTTCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTTTTTAAGTTCCATTT < 1:736132/76‑1 ATGTTTCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTTTTTAAGTTCCATTTTG < 2:247088/76‑1 ATGTTTCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTTTTTAAGTTCCATTTTG < 2:247097/76‑1 GTTTCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTTTTTAAGTTCCATTTTGTT < 2:825224/76‑1 TTTCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTTTTTAAGTTCCATTTTGTTC > 1:294354/1‑76 TTCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTTTTTAAGTTCCATTTTGTTat > 1:474138/1‑74 TTCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTTTTTAAGTTCCATTTTGTTCT > 2:90297/1‑76 TTCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTTTTTAAGTTCCATTTTGTTCT > 2:90312/1‑76 TCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTTTTTAAGTTCCATTTTGTTCTC > 1:830472/1‑76 GTAACATGATGCCTGGATATTAACCAGGAAAAGATCATCAGAAGTTCACTTTTTGTACTAAATAATTCGCATTTTATGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/570104‑570024‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatgtttCACTTTCCAGGTTTGTCTGTAATCGGGAATAATAGAAATATGTTCCATCAATTTTTTAAGTTCCATTTTGTTCTC < REL606/719050‑718976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |