| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041054 = | 54 (1.060) | 9 (0.200) | 5/136 | 5.1 | 13.2% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 70 (1.520) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041135‑2041054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atataatGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTT > REL606/2041468‑2041536 TTCATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGA < 2:1008912/76‑1 TCATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGAT < 2:304535/76‑1 ATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATAT > 1:130604/1‑76 TTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATA < 1:1265575/76‑1 TTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAA < 1:1602135/76‑1 TGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAAT > 1:40465/1‑76 TGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAAT < 1:778849/76‑1 TTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAAa < 2:1341753/76‑2 ATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATAT < 2:1196576/76‑1 ATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATAT < 2:1196556/76‑1 AATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATTATA < 2:1334431/76‑1 TGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACT < 2:429948/76‑1 TGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACT < 2:429960/76‑1 TGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACT < 2:429973/76‑1 ATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTT < 2:486260/76‑1 ATGGATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATAT < 2:995745/76‑1 ATATAATAGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTT > 1:1053171/1‑76 TTCATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041135‑2041054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atataatGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTT > REL606/2041468‑2041536 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |