| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2039854 = | 58 (1.140) | 8 (0.180) | 8/134 | 3.9 | 12.9% | coding (275/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040304 = | 56 (1.240) | coding (1080/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCTATGTA > REL606/2039782‑2039929 | ccTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTaaaa < 2:49149/76‑1 (MQ=255)ccTACATTTACCGTAAAAGCTTCACAATCCGCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTaaaa < 1:1503814/76‑1 (MQ=255) cTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAAt > 1:1195671/1‑76 (MQ=255) aTTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACa > 1:1630836/1‑76 (MQ=255) tttACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACan < 1:1148731/76‑2 (MQ=255) tttACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACAt < 1:458274/76‑1 (MQ=255) tttACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACAt > 2:523628/1‑76 (MQ=255) ttACCGTAAAAGCTNCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATc > 1:884926/1‑76 (MQ=255) aCCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCg > 2:10610/1‑76 (MQ=255) aCCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCg < 1:322100/76‑1 (MQ=255) aCCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCg < 2:606410/76‑1 (MQ=255) cGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGga < 1:474421/76‑1 (MQ=255) aaaaGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGgaaga < 1:313352/76‑1 (MQ=255) aaaGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGgaagaa < 2:726796/76‑1 (MQ=255) aaGCTTCACAATCCTCTTTGACCACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAAc < 1:166116/76‑1 (MQ=255) gCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACan < 1:161415/76‑2 (MQ=255) cTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAAt > 2:89506/1‑76 (MQ=255) cTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAAt > 2:653061/1‑76 (MQ=255) ttCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATa < 1:632113/76‑1 (MQ=255) ttCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATa < 2:1435685/76‑1 (MQ=255) cacaATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACt < 2:1394411/76‑1 (MQ=255) cacaATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACt < 1:574277/76‑1 (MQ=255) cgaTCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTc > 1:1327031/3‑76 (MQ=255) caATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTc > 1:1327013/1‑76 (MQ=255) aaTCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTcc > 2:1542350/1‑76 (MQ=255) aaTCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTcc > 1:402102/1‑76 (MQ=255) aTCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCg > 1:1598145/1‑76 (MQ=255) tCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGc > 1:36531/1‑76 (MQ=255) ccTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCa > 1:1560525/1‑76 (MQ=255) ctTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAAcc > 1:1165030/1‑76 (MQ=255) ttGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTa > 1:1298910/1‑76 (MQ=255) ttGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTa > 2:78523/1‑76 (MQ=255) tGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTAt < 1:296889/76‑1 (MQ=255) tGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTAt > 1:1381499/1‑76 (MQ=255) tGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTAt > 1:1381517/1‑76 (MQ=255) tGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTAt > 2:133508/1‑76 (MQ=255) tACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATa > 2:984381/1‑76 (MQ=255) aCAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATaa > 2:675661/1‑76 (MQ=255) aGAAAGACCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACa > 1:1022760/1‑76 (MQ=255) aaaGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATg > 2:1032556/1‑76 (MQ=255) agCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTg > 2:795644/1‑76 (MQ=255) aaTTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCtata < 1:583975/76‑1 (MQ=255) aaTTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCtata > 1:1175104/1‑76 (MQ=255) ttGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATaaa > 1:1011537/1‑76 (MQ=255) gctgcACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATa > 1:829292/1‑76 (MQ=255) gctgcACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATa > 1:1634081/1‑76 (MQ=255) ctgcACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATAc > 2:252129/1‑76 (MQ=255) gcACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAg < 2:1299468/76‑1 (MQ=255) cACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGt > 1:1575344/1‑76 (MQ=255) cACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGt > 1:209431/1‑76 (MQ=255) cACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGt > 1:307926/1‑76 (MQ=255) cACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGt > 2:848114/1‑76 (MQ=255) cACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGt > 2:848123/1‑76 (MQ=255) cccTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAATaa < 2:1548150/76‑2 (MQ=255) cATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCt > 1:1145603/1‑76 (MQ=255) cATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCt < 2:781192/76‑1 (MQ=255) cATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCt > 1:1145600/1‑76 (MQ=255) gTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCTATg < 1:620591/76‑1 (MQ=255) aaaaTAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCTATgta > 1:1315742/1‑76 (MQ=255) aaaaTAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCTATgta < 2:1390638/76‑1 (MQ=255) | CCTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCTATGTA > REL606/2039782‑2039929 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |