| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2039854 = | 58 (1.140) | 8 (0.180) | 8/134 | 3.9 | 12.9% | coding (275/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040304 = | 56 (1.240) | coding (1080/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTGGT > REL606/2040229‑2040379 | aaGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTc > 2:927270/1‑76 (MQ=255)aaGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTc > 2:213814/1‑76 (MQ=255) gCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTcac < 2:1075917/76‑1 (MQ=255) ccATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCacaa < 1:804602/76‑1 (MQ=255) ccATTTCTTTTAACTGAATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTGGGTTATTTTCacaa < 1:93633/76‑1 (MQ=255) aTTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCacaaca < 1:871835/76‑1 (MQ=255) tttCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCAcaacaa < 1:1275901/76‑1 (MQ=255) tttCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCAcaacaa > 1:1389250/1‑76 (MQ=255) ttCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAAt > 2:394431/1‑76 (MQ=255) ttCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAAt > 2:394421/1‑76 (MQ=255) ttCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAAt < 1:103460/76‑1 (MQ=255) ttCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAAt < 1:1504355/76‑1 (MQ=255) tCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAAtc < 1:989828/76‑1 (MQ=255) ttttAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAAtctc > 2:149900/1‑76 (MQ=255) ttAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCtt > 1:1216282/1‑76 (MQ=255) ttAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCtt > 2:752892/1‑76 (MQ=255) tAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTc < 1:1160384/76‑1 (MQ=255) cTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCAtt < 1:475825/76‑1 (MQ=255) tGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCAttt < 1:793084/76‑1 (MQ=255) gTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTa < 1:1008597/76‑1 (MQ=255) tttCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAAt < 1:1596767/76‑1 (MQ=255) tttCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAAt < 1:842756/76‑1 (MQ=255) tttCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAAt > 2:775132/1‑76 (MQ=255) tAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGtata > 1:857598/1‑76 (MQ=255) aaaTAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGtatat > 2:1523387/1‑76 (MQ=255) aaaTAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGtatat < 2:515148/76‑1 (MQ=255) aTAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTatatat > 2:495507/1‑76 (MQ=255) aTAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTatatat > 1:643298/1‑76 (MQ=255) tAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATAtt > 2:1292149/1‑76 (MQ=255) tAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATAtt < 1:388380/76‑1 (MQ=255) aGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTg < 2:282169/76‑1 (MQ=255) ggCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTgg > 1:1597199/1‑76 (MQ=255) ggCCATATCACATCTTACCAAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTAGGTATTga < 1:1023102/76‑2 (MQ=255) tatCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGc < 1:296562/76‑1 (MQ=255) tatCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGc < 1:296547/76‑1 (MQ=255) tCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCAt < 1:1438218/76‑1 (MQ=255) acaTCTTACCCAATNATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAg > 1:886987/1‑76 (MQ=255) acaTCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCAtgt < 2:1397431/76‑3 (MQ=255) acaTCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAg > 1:285755/1‑76 (MQ=255) caTCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAgg < 1:133649/76‑1 (MQ=255) caTCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAgg > 1:441093/1‑76 (MQ=255) cTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACt < 2:873415/76‑1 (MQ=255) ttACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACtt > 1:112511/1‑76 (MQ=255) ttACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAAACTGTATATATTGGCAAGCATAGGACtt > 2:846247/1‑76 (MQ=255) tACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACttt < 2:503117/76‑1 (MQ=255) ccAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATc < 1:574675/76‑1 (MQ=255) cAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCa < 2:814496/76‑1 (MQ=255) cAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCa < 1:1369034/76‑1 (MQ=255) ataataatTTGGTTTTTTTCACAACAATGTCTTGATTTGTATCTGTGTATATTGGGTGGCGTGGGAGTTTATCAgg < 2:77635/76‑2 (MQ=255) ataatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAac > 1:239706/1‑76 (MQ=255) ataatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAac < 1:1048037/76‑1 (MQ=255) taatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAaca < 1:495973/76‑1 (MQ=255) aatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAacac < 2:616095/76‑1 (MQ=255) tttGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActa > 1:980263/1‑76 (MQ=255) tttGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActa > 1:72918/1‑76 (MQ=255) tGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActatt < 2:46665/76‑1 (MQ=255) gTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattgg < 2:406122/76‑1 (MQ=255) ttATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggn < 1:1023338/76‑2 (MQ=255) aTTTTCACAACGATCTCTTCATTTACATATGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggcta > 1:1346316/1‑76 (MQ=255) aTTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggcta < 1:1499980/76‑1 (MQ=255) ttttCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggctat < 1:117354/76‑1 (MQ=255) ttttCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggctat < 1:698019/76‑1 (MQ=255) tttCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggctatt < 2:1430135/76‑1 (MQ=255) ttCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggctattg > 1:1351027/1‑76 (MQ=255) tCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggctattgg < 1:1623532/76‑1 (MQ=255) cacaACAATCTCTGCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTGGt > 1:1087150/1‑76 (MQ=255) | AAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTGGT > REL606/2040229‑2040379 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |