New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	568939 =	1 (0.020)	76 (1.640)	50/150	0.0	98.7%	coding (998/1137 nt)	yhhI	predicted transposase
	?	REL606	= 619884	NA (NA)					noncoding (1/768 nt)	IS1	repeat region

GCTGCACTGGCGTCTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/569013‑568939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG  <  REL606/619884‑619810                                                                                                                                                        GCTGCACTGGCGTCTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTG                                                                            <  2:603558/76‑1  CTGCACTGGCGTCTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGG                                                                           <  2:1410253/76‑1    GCACTGGCGTCTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTG                                                                         >  1:1277446/1‑76    GCACTGGCGTCTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTG                                                                         <  2:1321517/76‑1     CACTGGCGTCTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGA                                                                        >  2:981939/1‑76     CACTGGCGTCTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATCGGTGA                                                                        >  2:1492726/1‑76       CTGGCGTCTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATG                                                                      >  2:863349/1‑76       CTGGCGTCTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATG                                                                      >  1:16823/1‑76        TGGCGTCTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGC                                                                     >  2:1367023/1‑76           CGTCTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGC                                                                  <  2:122679/76‑1              CTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAA                                                               >  1:24502/1‑76              CTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAA                                                               <  2:1104343/76‑1               TGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAAC                                                              <  1:1112685/76‑1               TGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAAC                                                              >  2:1425381/1‑76               TGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAAC                                                              >  1:1194108/1‑76                 GACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTT                                                            <  1:772127/76‑1                    GTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACT                                                         >  2:1558/1‑76                    GTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACT                                                         <  1:46526/76‑1                     TGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTG                                                        <  2:768060/76‑1                     TGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTG                                                        <  1:1127500/76‑1                      GGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGA                                                       <  2:629009/76‑1                         AATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTT                                                    <  1:1483674/76‑1                         AATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTT                                                    <  2:1378711/76‑1                           TGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAG                                                  >  2:762903/1‑76                             AATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTG                                                >  2:120716/1‑76                                GAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTAT                                             <  1:1367023/76‑1                                GAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTAT                                             >  1:1358787/1‑76                                 AAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATG                                            <  2:1226138/76‑1                                  AGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGA                                           <  2:539030/76‑1                                   GACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT                                          >  1:73596/1‑76                                    ACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATG                                         <  2:1155426/76‑1                                      GACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT                                       >  1:641697/1‑76                                       ACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTG                                      <  2:262106/76‑1                                       ACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTG                                      <  2:1161893/76‑1                                        CTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGT                                     <  2:137314/76‑1                                         TGCAAAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT                                    <  1:1422089/76‑1                                             AAATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTG                                <  1:232510/76‑1                                              tATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA                               >  2:89498/2‑76                                               ATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAG                              >  2:1480983/1‑76                                               ATAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAG                              <  1:1329318/76‑1                                                TAAGAAGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG                             >  1:523779/1‑76                                                     AGAGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTC                        <  2:1126958/76‑1                                                       AGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCA                      >  2:223699/1‑76                                                       AGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCA                      >  1:1167244/1‑76                                                       AGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCA                      >  1:40578/1‑76                                                       AGGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTAGAGGTGCTCCA                      >  1:1315340/1‑76                                                        GGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAG                     <  1:214195/76‑1                                                        GGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAG                     <  1:350841/76‑1                                                        GGAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAG                     <  2:1258924/76‑1                                                         GAAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGT                    >  2:397667/1‑76                                                          AAATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTG                   <  2:756263/76‑1                                                           AATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGG                  >  1:493680/1‑76                                                           AATGCAGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGG                  >  2:1047690/1‑76                                                                AGCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCT             <  2:905113/76‑1                                                                 GCAGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTG            >  1:276734/1‑76                                                                  CAGAATTATTGGGGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGAGGCTTCTGT           >  2:1116054/1‑76                                                                   AGAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT          <  2:404096/76‑1                                                                    GAATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT         <  2:1070417/76‑1                                                                      ATTATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCT       <  1:1458086/76‑1                                                                       TTATTGGTGATGCTGCCAGCTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTA      <  1:963471/76‑1                                                                        TATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTAT     <  2:1092192/76‑1                                                                        TATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCAAGTGGATTCTGATTCTAT     >  1:680366/1‑76                                                                         ATTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATC    >  1:1317869/1‑76                                                                          TTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCA   >  1:1361802/1‑76                                                                          TTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCA   <  2:948047/76‑1                                                                          TTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCA   >  2:1320577/1‑76                                                                          TTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCA   <  2:471931/76‑1                                                                           TGGTGATGCTGCTATCTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG  <  2:641697/76‑1                                                                           TGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG  <  2:1219119/76‑1                                                                           TGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG  <  1:521639/76‑1                                                                           TGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG  >  1:529282/1‑76                                                                           TGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG  <  2:461954/76‑1                                                                           TGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG  <  2:328760/76‑1                                                                           TGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG  >  1:642826/1‑76                                                                           TGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG  <  1:86018/76‑1                                                                           TGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG  <  1:229797/76‑1                                                                                                                                                        GCTGCACTGGCGTCTGGACGTGGTAATGAATGAAGACGACTGCAAAATAAGAAGAGGAAATGCAGCAGAATTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/569013‑568939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG  <  REL606/619884‑619810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.