| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 568939 = | 1 (0.020) | 76 (1.640) | 50/150 | 0.0 | 98.7% | coding (998/1137 nt) | yhhI | predicted transposase |
| ? | REL606 | = 619884 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTATTTTCCTTACTCAT > REL606/619813‑619958 | aTAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTcc > 1:636201/1‑76 (MQ=32) gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCa < 1:1353365/76‑1 (MQ=38) gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCa > 2:1059890/1‑76 (MQ=38) aaaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCAt < 2:502207/76‑1 (MQ=39) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATaa < 2:1333808/76‑1 (MQ=255) aGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATg < 1:669670/76‑1 (MQ=255) aaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGat < 1:928855/76‑1 (MQ=255) gCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGatat > 2:957691/1‑76 (MQ=255) ccACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATAtt > 2:275882/1‑76 (MQ=255) ccACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATAtt < 2:1051375/76‑1 (MQ=255) cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAg > 1:514379/1‑76 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGc < 1:909227/76‑1 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGc > 1:45242/1‑76 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCg > 2:252037/1‑76 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCg > 1:157236/1‑76 (MQ=255) ctccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGtttt < 2:7160/74‑1 (MQ=255) cACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGtttt > 2:1196482/1‑76 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCt > 1:342496/1‑76 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCt > 2:355422/1‑76 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGAt > 2:1424879/1‑76 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGAt > 2:306609/1‑76 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGAt < 1:129334/76‑1 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATc > 2:959178/1‑76 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATc > 1:68246/1‑76 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCg < 1:1336604/76‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCg > 2:1392828/1‑76 (MQ=255) ccacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGc > 1:777028/2‑76 (MQ=255) cacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGCTCGGGCa < 1:959629/76‑1 (MQ=255) cacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCa < 2:1133104/76‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCaa > 1:963583/1‑76 (MQ=255) ccATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAAc < 1:902461/76‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAAccc > 1:201420/1‑76 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCAc < 2:673555/76‑1 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCAc < 2:265781/76‑1 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCt > 1:319018/1‑76 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCtgt < 1:768000/76‑1 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCtgtt < 1:314628/76‑1 (MQ=255) tCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCtgttgt > 2:407638/1‑76 (MQ=255) cAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTa < 1:645878/76‑1 (MQ=255) cAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTa > 1:164748/1‑76 (MQ=255) aGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAg > 1:339152/1‑76 (MQ=255) gTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGc > 1:142941/1‑76 (MQ=255) gTAAGTGTGCAGCATCACCTTCCCCATAATGATATGAAGCGTTTTCTGAGCGGGCACCCCCACGGCCTGTTGTAGc < 2:1479657/76‑1 (MQ=255) tAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGTAACCCCACGGCCTGTTGTAGCg > 2:613410/1‑76 (MQ=255) aaGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCACACGGCCTGTTGTAGCGt > 1:1136061/1‑76 (MQ=255) gTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTAt < 1:181458/76‑1 (MQ=255) ggCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTAtttt > 1:36049/1‑76 (MQ=255) cagcaTCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTATTTTcc > 1:1115454/1‑76 (MQ=255) agcaTCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTATTTTCCt > 2:520242/1‑76 (MQ=255) gcaTCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTATTTTCCtt < 2:666302/76‑1 (MQ=255) gcaTCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTATTTTCCtt < 1:700825/76‑1 (MQ=255) caTCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTATTTTCCTTa > 2:497391/1‑76 (MQ=255) aTCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTATTTTCCTTAc > 2:920966/1‑76 (MQ=255) aTCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTATTTTCCTTAc > 1:352593/1‑76 (MQ=255) tCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTATTTTCCTTACt > 1:183069/1‑76 (MQ=255) aCCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTATTTTCCTTACTCa < 2:470712/76‑1 (MQ=255) ccTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTATTTTCCTTACTCAt < 2:1233632/76‑1 (MQ=255) | ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTCCCCATAATGATATTAAGCGTTTTCTGATCGGGCAACCCCACGGCCTGTTGTAGCGTATTTTCCTTACTCAT > REL606/619813‑619958 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |