| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 540691 = | 116 (2.060) | 3 (0.050) | 3/150 | 6.7 | 2.5% | intergenic (+154/‑101) | emrE/ybcK | multidrug efflux protein/predicted recombinase |
| ? | REL606 | 540915 = | 122 (2.170) | coding (124/1527 nt) | ybcK | predicted recombinase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 123 total aligned reads displayed.
CTGGCGACTCATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCGGAATTTT > REL606/540841‑540990 | cTGGCGACTCATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATAc < 2:88499/76‑1 (MQ=255) cGACTCATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATa < 1:892998/76‑1 (MQ=255) cGACTCATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATa < 2:1337824/76‑1 (MQ=255) cGACTCATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATAACATa < 2:1079538/76‑1 (MQ=255) gACTCATTAAGCCGACAGAGAAGACNTNTTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATaa < 1:164342/76‑1 (MQ=255) gACTCATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATaa < 1:107831/76‑1 (MQ=255) aCTCATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATaat < 1:1023077/76‑2 (MQ=255) cTCATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACa > 1:1337331/1‑76 (MQ=255) tCATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATGGTGATTATTATCTTGATACCATAACat > 2:472345/1‑76 (MQ=255) tCATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACat < 1:1705603/76‑1 (MQ=255) tCATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACat > 1:397691/1‑76 (MQ=255) tCATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACat > 1:425753/1‑76 (MQ=255) cATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACata < 1:847804/76‑1 (MQ=255) cATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACata < 2:1296435/76‑1 (MQ=255) aaCCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAg < 2:1169029/76‑1 (MQ=255) ccGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGAt < 1:785470/76‑1 (MQ=255) ccGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGAt < 1:158107/76‑1 (MQ=255) cGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGAtt < 1:358729/76‑1 (MQ=255) gACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAGCATATGAAGAttt < 1:1208614/76‑1 (MQ=255) cAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAg < 1:895454/76‑1 (MQ=255) agagAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAgg < 1:1737578/76‑1 (MQ=255) gagaAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGa > 2:888439/1‑76 (MQ=255) agaagaCTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGAt < 2:1093533/76‑1 (MQ=255) gaagaCTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGAtt < 2:588480/76‑1 (MQ=255) aagaCTTATTGCTGAATGGTTAAAGGTAAGTAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTa < 1:793821/76‑1 (MQ=255) aagaCTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTa < 1:755408/76‑1 (MQ=255) aagaCTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTa < 1:793811/76‑1 (MQ=255) aagaCTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTa > 1:1338277/1‑76 (MQ=255) aagaCTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTa < 1:467259/76‑1 (MQ=255) agaCTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTaa < 2:1016102/76‑1 (MQ=255) gaCTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAg < 2:1279706/76‑1 (MQ=255) gaCTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAg > 2:1233050/1‑76 (MQ=255) gaCTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAg < 2:1537892/76‑1 (MQ=255) cTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTg < 2:1219231/76‑1 (MQ=255) cTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTg < 1:1194825/76‑1 (MQ=255) ttATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGc > 1:28475/1‑76 (MQ=255) tGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTc > 1:970780/1‑76 (MQ=255) tGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTc > 1:1070713/1‑76 (MQ=255) tGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTc < 2:1449992/76‑1 (MQ=255) tGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTc < 2:1439359/76‑1 (MQ=255) tGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTc > 1:1521257/1‑76 (MQ=255) gCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCa > 1:517441/1‑76 (MQ=255) gCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCa < 2:887265/76‑1 (MQ=255) gCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCa < 2:887245/76‑1 (MQ=255) tGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCaaa < 1:1747376/76‑1 (MQ=255) gAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTGGGATTAAGTGCATTCAAAg > 2:597829/1‑76 (MQ=255) gAATGCTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAg < 2:1814431/76‑1 (MQ=255) aTGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGa > 2:496363/1‑76 (MQ=255) aTGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGa > 1:813092/1‑76 (MQ=255) aTGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGa > 1:620123/1‑76 (MQ=255) tGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGaa > 2:333421/1‑76 (MQ=255) tGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGaa < 2:680775/76‑1 (MQ=255) tGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGaa > 2:633482/1‑76 (MQ=255) ggTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGaaa > 2:443590/1‑76 (MQ=255) gTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAg > 1:521369/1‑76 (MQ=255) ttAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGc > 2:1710507/1‑76 (MQ=255) ttAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGc > 2:1806545/1‑76 (MQ=255) aaaGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCAt < 1:1085333/76‑1 (MQ=255) gaGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATg > 1:1607179/2‑76 (MQ=255) aGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGc < 1:1497136/76‑1 (MQ=255) ggTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGca < 1:1124913/76‑1 (MQ=255) gTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGcac > 2:1763749/1‑76 (MQ=255) tAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGcaca > 2:1710247/1‑76 (MQ=255) tAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGcaca < 1:443590/76‑1 (MQ=255) tAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGcaca > 1:1327327/1‑76 (MQ=255) aaTAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAAt < 1:490792/76‑1 (MQ=255) aTAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATc > 1:1329538/1‑76 (MQ=255) aTAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATc > 1:267073/1‑76 (MQ=255) tAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCa > 2:1105640/1‑76 (MQ=255) tAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCa > 2:1105622/1‑76 (MQ=255) tAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCa < 1:49095/76‑1 (MQ=255) tAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCa < 1:609561/76‑1 (MQ=255) ngTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAg > 1:478492/2‑76 (MQ=255) aGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAg > 1:184552/1‑76 (MQ=255) aGTGATTATTATCNTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAg > 1:1227616/1‑76 (MQ=255) ctGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAgg > 1:953991/2‑76 (MQ=255) gATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAg < 2:1335678/76‑1 (MQ=255) gATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAg < 2:1545994/76‑1 (MQ=255) attattATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGc < 1:873543/76‑1 (MQ=255) tattatCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCtt > 2:1745241/1‑76 (MQ=255) tattatCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCtt < 2:316969/76‑1 (MQ=255) attatCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCttt < 1:1058198/76‑1 (MQ=255) attatCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCttt > 2:554925/1‑76 (MQ=255) ttatCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCtttt > 2:1574382/1‑76 (MQ=255) ttatCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCtttt > 2:1375393/1‑76 (MQ=255) tatCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCttttt > 2:1810024/1‑76 (MQ=255) atCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTc > 1:1501132/1‑76 (MQ=255) tCTTTATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCg > 1:1527369/1‑76 (MQ=255) cTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCgg > 2:519486/1‑76 (MQ=255) cTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCgg < 2:1439139/76‑1 (MQ=255) ttGATAACATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGACAGCATGCACAATCAGGAGCTTTTTCGGa < 1:912071/76‑1 (MQ=255) tGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCGGan < 1:1819828/76‑2 (MQ=255) tGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCGGaa > 2:119398/1‑76 (MQ=255) tGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCGGaa > 1:691626/1‑76 (MQ=255) tGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCGGaa > 1:66083/1‑76 (MQ=255) tGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCGGaa < 1:1279595/76‑1 (MQ=255) aTACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCGGAAtt > 1:409497/1‑76 (MQ=255) aTACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCGGAAtt > 1:190242/1‑76 (MQ=255) aTACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCGGAAtt < 2:665647/76‑1 (MQ=255) aCCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCGGAAtttt > 2:1186197/1‑76 (MQ=255) | CTGGCGACTCATTAAACCGACAGAGAAGACTTATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCAAAGGAAAGCATGCACAATCAGGAGCTTTTTCGGAATTTT > REL606/540841‑540990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |