| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2042274 | 120 (2.120) | 13 (0.260) | 6/134 | 4.4 | 12.1% | coding (547/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | = 2042743 | 82 (1.620) | coding (78/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2042192‑2042274‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacaattATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTATTTCT < REL606/2042743‑2042669 AATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAA < 1:1610805/76‑1AATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAA > 1:264545/1‑76AATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAA > 1:281802/1‑76AATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAA < 1:911598/76‑1 ATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAAT > 2:1558852/1‑76 TGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATA > 1:1281974/1‑76 TGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATA < 2:89161/76‑1 TGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATA < 2:116374/76‑1 TGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATA > 1:979509/1‑76 GAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATAC < 1:1804142/76‑1 AAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACA > 2:1565691/1‑76 AAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACA < 1:1738765/76‑1 AAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAA > 2:962076/1‑76 AATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATCCAAT < 1:1752133/76‑1 AATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAAT < 1:1752153/76‑1 ACCATGGATTATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTC > 2:240101/1‑76 TTATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTT > 2:910010/1‑76 TTATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTT > 2:910007/1‑76 TTATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTT > 2:909996/1‑76 TATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTA > 2:265472/1‑76 TATAAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTA > 2:265454/1‑76 TAAATATTCAGTACAATACAATTATTATTAAGGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATG > 2:827360/1‑76 AAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGT > 2:204949/1‑76 AAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGT > 2:204939/1‑76 AAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGT > 2:342989/1‑76 AAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGT > 2:816970/1‑76 AAATATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGT > 2:816991/1‑76 ATTCAGTACAATACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGT > 2:30099/1‑76 ACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTA > 2:230693/1‑76 ACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTA < 1:711924/76‑1 ACAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTA < 2:1357658/76‑1 CAATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTAT < 1:1473015/76‑1 AATTATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTATT < 1:1515245/76‑1 TATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTACCTTTATTTCT > 1:1323655/1‑76 TATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTATTTCT > 1:166457/1‑76 AATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2042192‑2042274‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacaattATTATTAATGTTGTATTTGGGTAGGGTTCTTGGACCAAGCTCTTTTGGTTATGTTGGTATGCTAACTTTATTTCT < REL606/2042743‑2042669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |