| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2042274 | 120 (2.120) | 13 (0.260) | 6/134 | 4.4 | 12.1% | coding (547/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | = 2042743 | 82 (1.620) | coding (78/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 120 total aligned reads displayed.
TAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGCAGCTAACGTTATCGCTAT > REL606/2042200‑2042349 | tAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAAttt > 2:517601/1‑76 (MQ=255) aGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTa > 2:63622/1‑76 (MQ=255) gCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTAt < 1:1110684/76‑1 (MQ=255) cTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATg < 2:1637857/76‑1 (MQ=255) tttttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGa > 2:1481752/1‑76 (MQ=255) nttttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACACTTTATGa > 1:121009/2‑76 (MQ=255) ttttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGac > 1:213142/1‑76 (MQ=255) ttttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGac < 1:583003/76‑1 (MQ=255) ttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGacac > 2:1748684/1‑76 (MQ=255) ttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGacac > 1:1667539/1‑76 (MQ=255) aaTGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACtat > 2:1180561/1‑76 (MQ=255) aaTGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACtat < 1:1672684/76‑1 (MQ=255) aaTGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACtat > 1:1132483/1‑76 (MQ=255) tGTTTCATAGCAANATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAg > 1:1227343/1‑76 (MQ=255) tGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAg > 2:1418408/1‑76 (MQ=255) tGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAg < 2:832095/76‑1 (MQ=255) tGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAg < 1:1434448/76‑1 (MQ=255) ttCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGAt < 2:1343210/76‑1 (MQ=255) ttCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGAt < 2:909313/76‑1 (MQ=255) ttCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGAt < 1:102722/76‑1 (MQ=255) tCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATa > 1:364471/1‑76 (MQ=255) tCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATa < 2:685371/76‑1 (MQ=255) cATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATaa < 2:480884/76‑1 (MQ=255) cATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATaa > 1:413796/1‑76 (MQ=255) cATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATaa > 1:1110598/1‑76 (MQ=255) cATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATaa < 2:166189/76‑1 (MQ=255) tAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACg < 1:1484765/76‑1 (MQ=255) gCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGAt < 1:1193988/76‑1 (MQ=255) cAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGAtt > 1:1246924/1‑76 (MQ=255) cAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGAtt > 1:1066504/1‑76 (MQ=255) aaaaTTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTg > 1:569603/1‑76 (MQ=255) aaaaTTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTg > 1:1614509/1‑76 (MQ=255) aTTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGaa > 2:821735/1‑76 (MQ=255) aTTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGaa < 1:628468/76‑1 (MQ=255) aTTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGaa > 1:1302783/1‑76 (MQ=255) aTTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGaa < 2:124702/76‑1 (MQ=255) aTTGCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGaa < 1:628457/76‑1 (MQ=255) tttCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGaaa < 2:290806/76‑1 (MQ=255) tgtctcTTTTGGATACCATGGATTAGAAATATTCAGTACAAGACAATTTAGGACACTAGAGGATAACGATTGGaaa < 2:290800/74‑1 (MQ=255) ttCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGaaaa > 2:213405/1‑76 (MQ=255) tctcTTTTGGATANCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAAc > 1:1228137/1‑76 (MQ=255) tctcTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAAc > 2:127897/1‑76 (MQ=255) ctctTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAAcc < 2:774149/76‑1 (MQ=255) ctctTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAAcc < 1:14308/76‑1 (MQ=255) ctctTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAAcc > 1:1041479/1‑76 (MQ=255) ctTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCaa > 2:607546/1‑76 (MQ=255) ctTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCaa < 1:1557970/76‑1 (MQ=255) ctTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCaa < 1:1557956/76‑1 (MQ=255) ctTGTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCaa < 1:1262866/76‑1 (MQ=255) ttttGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAAt > 2:1322384/1‑76 (MQ=255) tttGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATg < 1:6466/76‑1 (MQ=255) ggATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTcc > 1:389604/1‑76 (MQ=255) ggATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTcc > 1:1572220/1‑76 (MQ=255) gATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCa > 1:1339744/1‑76 (MQ=255) aTACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCAt > 2:930444/1‑76 (MQ=255) tACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATa > 1:698464/1‑76 (MQ=255) aCCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATAc > 1:240101/1‑76 (MQ=255) ccATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACt > 2:1612488/1‑76 (MQ=255) cATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTc > 1:790006/1‑76 (MQ=255) gATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATa < 1:960203/76‑1 (MQ=255) gATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATa < 2:1250287/76‑1 (MQ=255) gATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATa < 2:1530468/76‑1 (MQ=255) aTTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATaa < 1:1264079/76‑1 (MQ=255) aTTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATaa > 1:290043/1‑76 (MQ=255) ttATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAc < 2:938727/76‑1 (MQ=255) ttATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAc > 1:910010/1‑76 (MQ=255) ttATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAc > 1:910007/1‑76 (MQ=255) ttATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAc > 1:909996/1‑76 (MQ=255) tataAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAcc > 1:266990/1‑76 (MQ=255) tataAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAcc > 2:313938/1‑76 (MQ=255) tataAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAcc > 1:266978/1‑76 (MQ=255) tataAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAcc > 1:265472/1‑76 (MQ=255) taAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCa > 1:827360/1‑76 (MQ=255) aaaTATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCaa > 1:204939/1‑76 (MQ=255) aaaTATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCaa > 1:204949/1‑76 (MQ=255) aaaTATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCaa > 1:816970/1‑76 (MQ=255) aaTATTCAGTACAATACAATTTATGACACTATAGGGTAACGATTGGAAAACCAATGTCCATACTCCATAACCCaaa < 2:1348811/76‑1 (MQ=255) aaTATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCaaa > 1:631851/1‑76 (MQ=255) aaTATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCaaa < 1:60003/76‑1 (MQ=255) tatTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAagc < 1:1770171/76‑1 (MQ=255) atTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAcgca > 1:570901/1‑76 (MQ=255) atTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAagca > 2:892031/1‑76 (MQ=255) atTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAagca > 1:1498580/1‑76 (MQ=255) atTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAagca > 1:30099/1‑76 (MQ=255) atTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAagca > 1:570896/1‑76 (MQ=255) ttCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAagcag < 1:1612190/76‑1 (MQ=255) tCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAagcagc > 1:1691694/1‑76 (MQ=255) cAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGCAGCt > 1:451389/1‑76 (MQ=255) cAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCAAAAGCAGCt < 1:1714365/76‑1 (MQ=255) tacaatacaaTTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGCAGCTAAc > 1:46766/1‑76 (MQ=255) caatacaatTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGCAGCTAACGt > 1:1266897/1‑76 (MQ=255) aatacaatTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGCAGCTAACGtt < 2:42672/76‑1 (MQ=255) aatacaatTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGCAGCTAACGtt > 1:789677/1‑76 (MQ=255) atacaatTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGCCGCTAACGTTa > 2:566165/1‑76 (MQ=255) tacaatTTATGACACTAGAGGATAACGATTGGAAAACCAAAGTCCATACTCCATAACCCAAAGCAGCTAACGTTAt < 1:574406/76‑1 (MQ=255) acaatTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGCAGCTAACGTTATc > 2:489288/1‑76 (MQ=255) acaatTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGCAGCTAACGTTATc > 2:1219114/1‑76 (MQ=255) acaatTTATGACACNATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGCAGCTAACGTTATc > 1:996530/1‑76 (MQ=255) tttATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGCAGCTAACGTTATCGCTa < 1:802499/76‑1 (MQ=255) ttATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGCAGCTAACGTTATCGCTAt > 1:20757/1‑76 (MQ=255) | TAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGCAGCTAACGTTATCGCTAT > REL606/2042200‑2042349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |