| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2774196 | NA (NA) | 45 (0.750) | 30/144 | 1.0 | 51.1% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4210241 = | 43 (0.720) | intergenic (+84/+49) | yjbC/yjbD | 23S rRNA pseudouridine synthase/hypothetical protein | |||||
CGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2774122‑2774196‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGAC > REL606/4210241‑4210311 CGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGA < 2:799770/76‑1CGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGA > 2:1536213/1‑76CGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGA < 2:1457056/76‑1 GAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAA < 1:1610543/76‑1 AGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAA < 1:1490421/76‑1 GGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAA < 1:196736/76‑1 GCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAAT < 2:1638655/76‑1 CATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATT > 1:902031/1‑76 CATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATT < 1:912188/76‑1 CGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTG > 1:84817/1‑76 GTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGT > 2:1450542/1‑76 CTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTC > 1:78152/1‑76 CTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTC > 1:41497/1‑76 CGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACT < 2:1457688/76‑1 ACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAG > 1:343941/1‑76 GCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAA < 2:567212/76‑1 GTCGCGTTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATC < 2:1956114/76‑1 GTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATC < 2:934066/76‑1 TCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCT < 2:152831/76‑1 TCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCT > 1:1034828/1‑76 TCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCT < 1:1217637/76‑1 CATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAG > 1:1031749/1‑76 CATTCTTCAGATGCTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAG > 1:1320300/1‑76 ATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGG < 2:966060/76‑1 TCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTG < 1:6780/76‑1 AGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGAT < 2:541490/76‑1 aGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTG > 1:1038021/2‑76 CAACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATT < 1:1802528/76‑1 ACCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAG < 2:961375/76‑1 CCCTTAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGC < 1:1450116/76‑1 TAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCT > 1:66471/1‑76 TAAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCT > 2:41971/1‑76 AAGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTG < 2:954775/76‑1 AGTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGC < 2:235899/76‑1 GTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCC > 1:637425/1‑76 GTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCC > 1:1755853/1‑76 GTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCC > 1:1504761/1‑76 GTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCC > 1:889057/1‑76 GTTAGCGCTTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCC < 2:722548/76‑1 TTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCG < 2:1756909/76‑1 TTATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCG < 2:267495/76‑1 TATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGA > 1:722289/1‑76 TATGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGA > 1:696083/1‑76 TATGGGAAAATTGAGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGA > 1:1309658/1‑76 ATGGGAAAATTGTATTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGAC > 1:1319151/1‑76 CGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2774122‑2774196‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGAC > REL606/4210241‑4210311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |