| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2774196 | NA (NA) | 45 (0.750) | 30/144 | 1.0 | 51.1% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4210241 = | 43 (0.720) | intergenic (+84/+49) | yjbC/yjbD | 23S rRNA pseudouridine synthase/hypothetical protein | |||||
CAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACGTATT > REL606/4210167‑4210316 | cgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatggga < 2:1457056‑M2/1‑1 (MQ=255)cgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatggga < 2:799770‑M2/1‑1 (MQ=255)cgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatggga > 2:1536213‑M2/76‑76 (MQ=255) gaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaa < 1:1610543‑M2/2‑1 (MQ=255) gtcTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑GCCCTTCGGGAAAAGGGTTAGGGTGAGGGGaaaa < 2:1445497/74‑1 (MQ=255) aggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaaa < 1:1490421‑M2/3‑1 (MQ=255) ggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaaaa < 1:196736‑M2/4‑1 (MQ=255) aCTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAAt < 2:134364/76‑1 (MQ=255) aCTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAAt < 1:345362/76‑1 (MQ=255) gcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAAt < 2:1638655‑M2/5‑1 (MQ=255) cTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAAtt < 2:1548048/76‑1 (MQ=255) tgatgaAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTCGGGAAAAGGGGTAGGGGGAGGGGAAAATtg > 1:1949895/1‑76 (MQ=255) catcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAAtt < 1:912188‑M2/6‑1 (MQ=255) catcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAAtt > 1:902031‑M2/71‑76 (MQ=255) natgaAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCGCCCCCTTCGGCAAAGGGGTAGGGGGGGGGGGGAAAtgt > 1:796568/2‑74 (MQ=16) cgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAATtgtg > 1:84817‑M2/68‑76 (MQ=255) gtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAATTgtgt > 2:1450542‑M2/67‑76 (MQ=255) gaAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTCGGGGAAAGGGGTAGGGTGAGGGGAAAATTGTGtt > 2:759255/1‑76 (MQ=255) cttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAATTGTGTTc > 1:78152‑M2/65‑76 (MQ=255) cttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAATTGTGTTc > 1:41497‑M2/65‑76 (MQ=255) ggCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTCGGGGAAAGGGGTAGGGGGAGGGGGAAAATGTGTTCACACt > 1:1572266/1‑76 (MQ=18) cgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACt < 2:1457688‑M2/17‑1 (MQ=255) cAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTCGCGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACg < 2:445420/76‑1 (MQ=255) aaaGTGCCCGGACAGTCCCCTCG‑CCCCTTCGGGGAAAGGGGTAGGGGGAGGGGAAAATTGTGTTCACAATGACGAg > 2:733763/1‑76 (MQ=21) aaaGTGCCCGGACAGTCCCCTCG‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAg < 2:876840/76‑1 (MQ=255) accgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAg > 1:343941‑M2/54‑76 (MQ=255) gCCCGGACAGTCCCCTCG‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGaaa < 2:1501699/76‑1 (MQ=255) gCCCGGACAGTCCCCTCG‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGaaa < 1:716639/76‑1 (MQ=255) gcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGaaaa < 2:567212‑M2/29‑1 (MQ=255) cGGACAGTCCCCTCG‑CCCCTTCGGGGAAAGGGGTAGGGGGAGGGGGAAATTGTGTTCACACTGACGAGTGaaaaaa > 2:552485/1‑74 (MQ=25) gtcgcgttcttcagatggttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAAtc < 2:1956114‑M2/31‑1 (MQ=255) gtcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAAtc < 2:934066‑M2/31‑1 (MQ=255) tcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAAtct < 2:152831‑M2/32‑1 (MQ=255) tcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAAtct > 1:1034828‑M2/45‑76 (MQ=255) tcgcattcttcagatggttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAAtct < 1:1217637‑M2/32‑1 (MQ=255) gACAGTCCCCTCG‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAAtctc < 2:123152/76‑1 (MQ=255) aCAGTCCCCTCG‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCa > 2:577840/1‑76 (MQ=255) cattcttcagatggttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAg > 1:1031749‑M2/42‑76 (MQ=255) cattcttcagatgcttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAg > 1:1320300‑M2/42‑76 (MQ=255) gTCCCCTCG‑CCCCTTCGGGGAAAGGGTTAGGGGGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAggg > 2:1874130/1‑75 (MQ=255) attcttcagatggttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAgg < 2:966060‑M2/36‑1 (MQ=255) tCCCCTCG‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCg < 2:701217/76‑1 (MQ=255) cccTCG‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGtt > 2:755687/1‑76 (MQ=255) ccTCG‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTg < 1:167747/76‑1 (MQ=255) tcagatggttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTg < 1:6780‑M2/41‑1 (MQ=255) agatggttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGAt < 2:541490‑M2/43‑1 (MQ=255) g‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGAtgg > 2:1306008/1‑74 (MQ=255) g‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATtg < 2:577220/76‑1 (MQ=255) g‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATtg > 1:214503/1‑76 (MQ=255) ccccTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATtgt > 1:1375422/1‑76 (MQ=255) ccccTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATtgt < 1:253657/76‑1 (MQ=255) agttcaacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATtgtg > 1:1038021‑M2/30‑76 (MQ=255) caacccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGAtt < 1:1802528‑M2/51‑1 (MQ=255) cGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTa < 2:240332/76‑1 (MQ=255) acccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAg < 2:961375‑M2/53‑1 (MQ=255) ggAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAgc < 1:1068116/76‑1 (MQ=255) cccttaagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAgc < 1:1450116‑M2/54‑1 (MQ=255) taagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCt > 1:66471‑M2/19‑76 (MQ=255) taagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCt > 2:41971‑M2/19‑76 (MQ=255) acgggTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCt < 2:1264924/74‑1 (MQ=255) aaGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCt < 2:790625/76‑1 (MQ=255) aaGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCt < 2:326607/76‑1 (MQ=255) aagttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTg < 2:954775‑M2/59‑1 (MQ=255) aGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTg < 2:1527705/76‑1 (MQ=255) aGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTg < 2:181308/76‑1 (MQ=255) gggTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGc > 1:901739/1‑76 (MQ=255) agttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGc < 2:235899‑M2/60‑1 (MQ=255) gttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGcc > 1:889057‑M2/16‑76 (MQ=255) gttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGcc > 1:637425‑M2/16‑76 (MQ=255) gttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGcc < 2:722548‑M2/61‑1 (MQ=255) gttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGcc > 1:1504761‑M2/16‑76 (MQ=255) gttagcgcttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGcc > 1:1755853‑M2/16‑76 (MQ=255) gTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCcg < 1:1221996/76‑1 (MQ=255) gTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCcg > 2:215711/1‑76 (MQ=255) ttAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCcgc > 1:418911/1‑76 (MQ=255) ggTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGt < 2:1141887/76‑1 (MQ=255) ggTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGt > 1:1546518/1‑76 (MQ=255) gTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTc < 2:553380/76‑1 (MQ=255) ttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCg < 2:1756909‑M2/69‑1 (MQ=255) ttatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCg < 2:267495‑M2/69‑1 (MQ=255) tGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCg < 1:1599356/76‑1 (MQ=255) tatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGa > 1:696083‑M2/7‑76 (MQ=255) tatgggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGa > 1:722289‑M2/7‑76 (MQ=255) tatgggAAAATTGAGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGa > 1:1309658‑M2/7‑76 (MQ=255) gAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGa > 1:909309/1‑76 (MQ=255) atgggAAAATTGTATTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGAc > 1:1319151‑M2/6‑76 (MQ=255) aGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGAc < 2:161424/76‑1 (MQ=255) ggggAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACg < 2:1741010/76‑1 (MQ=255) aaaaTTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACGTAtt > 2:232325/1‑76 (MQ=255) | CAGACTGATGAAAACGGCCCAAAAGTGCCCGGACAGTCCCCTCG‑CCCCTTCGGGAAAAGGGTTAGGGTGAGGGGAAAATTGTGTTCACACTGACGAGTGAAAATCTCAGGCGTTGATTGTGGATTAGCGCCTGCCGCGCGTCGACGTATT > REL606/4210167‑4210316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |