| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 105 (1.750) | 66/144 | 0.0 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 71 (1.180) | 56/144 | 0.0 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
Only 100 of 183 total aligned reads displayed.
CATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCAGGGACG > REL606/4524447‑4524597 | cATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGc > 2:394233/1‑76 (MQ=255)cATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGCCGCGTTATTTTGCAACCGGGGc > 1:44626/1‑76 (MQ=255) aTTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGcc > 1:836690/1‑76 (MQ=255) aTTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGcc < 2:1598718/76‑1 (MQ=255) tttAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCg < 2:1733395/76‑1 (MQ=255) aggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCg < 1:47745‑M2/3‑1 (MQ=255) ttAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGc > 2:764917/1‑76 (MQ=255) ttAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGc > 2:1611373/1‑76 (MQ=255) aGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCaa > 1:103042/1‑76 (MQ=255) gTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAc > 1:764917‑M2/1‑75 (MQ=255) ggcttaacgaggcaccggggtgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAAcccc < 2:1477189‑M2/10‑1 (MQ=255) cAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAccca > 2:1498430‑M2/1‑72 (MQ=255) cAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAccca > 2:1524400‑M2/1‑72 (MQ=255) tcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCg < 1:203521‑M2/11‑1 (MQ=255) cttaacgaggcaccgaggcgtcggattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCgg > 1:1265034‑M2/65‑76 (MQ=255) aaaCAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAGcccataa < 2:1395304‑M2/76‑8 (MQ=255) aaaCAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataa > 1:1721847‑M2/1‑69 (MQ=255) aaaCAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataa > 1:1171162‑M2/1‑69 (MQ=255) taacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGt < 2:1979397‑M2/14‑1 (MQ=255) aacaacCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataag > 1:1427550‑M2/1‑68 (MQ=255) aacaacCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataag < 2:345790‑M2/76‑9 (MQ=255) acaacCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagc > 1:980370‑M2/1‑67 (MQ=255) acaacCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagc > 2:407086‑M2/1‑67 (MQ=255) aacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGtg > 2:364179‑M2/62‑76 (MQ=255) caacCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcg < 1:1396753‑M2/76‑11 (MQ=255) aggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGtgctgc < 1:871883‑M2/19‑1 (MQ=255) ggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTgctgct > 2:1391858‑M2/57‑76 (MQ=255) cTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaac > 2:643808‑M2/1‑61 (MQ=255) cTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaac > 1:329223‑M2/1‑61 (MQ=255) tGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaact > 1:1824615‑M2/1‑60 (MQ=255) tGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaact < 1:1516086‑M2/76‑17 (MQ=255) caccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTaa < 2:1956044‑M2/22‑1 (MQ=255) gAATAAGGGAGCCAATGCCATTGCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaactt > 2:811585‑M2/1‑59 (MQ=255) gAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaactt < 1:389299‑M2/76‑18 (MQ=255) gAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAccaataagcgctaactt > 1:1066132‑M2/1‑59 (MQ=255) aaTAACGGAACCANTACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaactta < 1:1336207‑M2/76‑19 (MQ=255) aaTAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaactta > 1:1211314‑M2/1‑58 (MQ=255) aaTAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaactta < 1:564603‑M2/76‑19 (MQ=255) cgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGc < 2:913966‑M2/25‑1 (MQ=255) aTAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaa > 1:196009‑M2/1‑57 (MQ=255) aTAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaa < 2:1113073‑M2/76‑20 (MQ=255) aTAACGGAACCAATACCATTCCGTTCCAGGCGCGTAATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaa < 2:1790857‑M2/76‑20 (MQ=255) aggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCgg < 1:1023890‑M2/27‑1 (MQ=255) ggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGa < 1:1602086‑M2/28‑1 (MQ=255) ggAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataaacgctaacctaagggtt < 2:939755‑M2/76‑25 (MQ=255) gtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGc > 2:1358360‑M2/46‑76 (MQ=255) aaCCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgt > 2:588820‑M2/1‑50 (MQ=255) aCCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtg > 2:140103‑M2/1‑49 (MQ=255) cattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGAcc < 1:656590‑M2/35‑1 (MQ=255) cAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggt > 1:1645705‑M2/1‑47 (MQ=255) attcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCt > 1:1467005‑M2/41‑76 (MQ=255) attcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCt < 1:1484561‑M2/36‑1 (MQ=255) ttcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCtt < 2:624972‑M2/37‑1 (MQ=255) aTACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtat < 1:525989‑M2/76‑32 (MQ=255) tACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtatt > 2:416057‑M2/1‑44 (MQ=255) tACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtatt > 1:1871396‑M2/1‑44 (MQ=255) cttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCa > 1:1835550‑M2/38‑76 (MQ=255) aCCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtatta > 1:1252549‑M2/1‑43 (MQ=255) ttcagatggttcgacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCaa < 2:186385‑M2/40‑1 (MQ=255) ttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCaa > 1:787540‑M2/37‑76 (MQ=255) ccATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattac < 1:2123‑M2/76‑35 (MQ=255) cagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAgg > 2:1546280‑M2/35‑76 (MQ=255) agatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGt > 1:1970895‑M2/34‑76 (MQ=255) tCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcct > 1:1624374‑M2/1‑38 (MQ=255) tCCGGCCCAGGCGCGTTATTTTGCAGCCGGGGCCGCAGcccataagcgctaacttaagggttctggtattacgcct > 1:1332562‑M2/1‑38 (MQ=255) gatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGtt < 1:1385013‑M2/44‑1 (MQ=255) ccGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctg > 1:986484‑M2/1‑37 (MQ=255) atggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTc < 2:499825‑M2/45‑1 (MQ=255) gTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgat > 1:226219‑M2/1‑35 (MQ=255) ttCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccatatgcgctaacttaagggttgtggtattacgcctgata > 2:1813814‑M2/1‑34 (MQ=255) ttCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgata > 1:965672‑M2/1‑34 (MQ=255) tCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatat > 2:1726410‑M2/1‑33 (MQ=255) tcagcccttaagttagcgcgtatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTAt < 2:1265034‑M2/50‑1 (MQ=255) tcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTAt > 2:1060146‑M2/27‑76 (MQ=255) caacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATc > 2:1901603‑M2/26‑76 (MQ=255) ggCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatt > 1:267783‑M2/1‑29 (MQ=255) cgcgTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgattta < 1:864075‑M2/76‑50 (MQ=255) cgcgTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgattta > 2:735575‑M2/1‑27 (MQ=255) cttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATaa < 1:1787919‑M2/56‑1 (MQ=255) cttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATaa < 1:828587‑M2/56‑1 (MQ=255) cttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATaa > 2:1196547‑M2/21‑76 (MQ=255) ttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAAc > 1:690828‑M2/20‑76 (MQ=255) ttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAAc > 2:1213564‑M2/20‑76 (MQ=255) cgTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaac < 1:1355358‑M2/76‑52 (MQ=255) gTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacg > 2:954360‑M2/1‑24 (MQ=255) aagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCt < 2:108743‑M2/59‑1 (MQ=255) tATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtg < 1:346241‑M2/76‑55 (MQ=255) agttagcgcttatgggCCGCAACCCCAGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTa > 1:962330‑M2/17‑76 (MQ=255) aTTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgc > 1:649056‑M2/1‑21 (MQ=255) gcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGt < 1:892142‑M2/67‑1 (MQ=255) cAACCGGGGCCGCAAcccataaccgctaacttaagggttgtggtattacacctgatataactaaacgggccgatac < 2:1681862‑M2/76‑62 (MQ=255) cttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGtt > 2:1410111‑M2/9‑76 (MQ=255) aCCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaat > 2:1132993‑M2/1‑13 (MQ=255) tatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCa > 1:614851‑M2/7‑76 (MQ=255) tatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCa > 1:416014‑M2/7‑76 (MQ=255) ggggCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaccgtgccgatgaattac < 2:1947607‑M2/76‑67 (MQ=255) ggggCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattac < 1:1551932‑M2/76‑67 (MQ=255) ggggCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattac < 1:1549604‑M2/76‑67 (MQ=255) ccGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCAGGGACg < 1:119143/76‑1 (MQ=255) ccGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCAGGGACg < 2:866942/76‑1 (MQ=255) | CATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCAGGGACG > REL606/4524447‑4524597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |