mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 2,231,892 | 0 | A | C | 48.4% | 32.3 / 10.8 | 32 | T25P (ACC→CCC) | yejH | predicted ATP‑dependet helicase |
| * | REL606 | 3,492,082 | 0 | T | G | 34.4% | 121.3 / 29.0 | 64 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 2,448,098 | 0 | T | G | 31.5% | 104.6 / 15.1 | 54 | F278V (TTT→GTT) | nupC | nucleoside (except guanosine) transporter |
| Marginal new junction evidence (lowest skew 10 of 508 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3022392 = | 88 (1.560) | 27 (0.530) | 18/136 | 2.0 | 19.3% | coding (293/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022865 = | 146 (2.850) | intergenic (‑181/+393) | ECB_02821/ECB_02822 | hypothetical protein/bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase | |||||
| * | ? | REL606 | 2041220 = | 86 (1.520) | 25 (0.470) | 17/142 | 2.3 | 15.0% | coding (164/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041465 = | 201 (3.760) | coding (1356/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | = 2036902 | 171 (3.020) | 21 (0.420) | 13/134 | 2.8 | 16.3% | coding (57/1113 nt) | wbbC | putative glycosyltransferase WbbC |
| ? | REL606 | = 2037269 | 63 (1.250) | coding (862/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| * | ? | REL606 | = 2042145 | 116 (2.050) | 13 (0.260) | 12/132 | 3.0 | 10.1% | coding (676/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | = 2042541 | 129 (2.600) | coding (280/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2041421 = | 151 (2.670) | 17 (0.340) | 12/132 | 3.0 | 11.1% | coding (1400/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2041804 = | 140 (2.820) | coding (1017/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | = 2038375 | 129 (2.280) | 25 (0.500) | 12/132 | 3.0 | 19.6% | coding (574/822 nt) | wbbB | putative glycosyltransferase WbbB |
| ? | REL606 | = 2038763 | 92 (1.850) | coding (186/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | = 3021607 | 154 (2.720) | 22 (0.420) | 12/138 | 3.2 | 15.5% | coding (1078/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | = 3022022 | 98 (1.890) | coding (663/1140 nt) | ECB_02821 | hypothetical protein | |||||
| * | ? | REL606 | 2039188 = | 96 (1.700) | 31 (0.590) | 12/140 | 3.2 | 20.2% | coding (507/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | 2039561 = | 155 (2.940) | coding (134/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | 2037848 = | 112 (1.980) | 31 (0.590) | 12/140 | 3.2 | 20.9% | coding (283/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | 2038306 = | 130 (2.470) | coding (643/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | 3201814 = | 111 (1.960) | 17 (0.320) | 12/142 | 3.3 | 13.4% | coding (366/1104 nt) | yhaC | hypothetical protein |
| ? | REL606 | 3202251 = | 115 (2.150) | coding (803/1104 nt) | yhaC | hypothetical protein | |||||