New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2037389 =	30 (0.760)	3 (0.080)	3/142	4.7	7.9%	coding (742/1176 nt)	wzy	O antigen polymerase (Wzy)
	?	REL606	2037953 =	42 (1.120)					coding (178/1176 nt)	wzy	O antigen polymerase (Wzy)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGATTCTTTTAATCAACAATTTATGAAGGTTGTTGGCAGAGTTCAAACAGTTTCACACGTTGCATTTATA‑‑ACAGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2037465‑2037389 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGTTTCTGATTTAAACCCCATTAAA  >  REL606/2037953‑2038026                                                                                                                                                           GGATTCTTTTAATCAACAATTTATGAAGGTTGTTGGCAGAGTTCAAACAGTTTCACACGTTGCATTTATA‑‑ACAGAT                                                                             <  1:654695/76‑1  GATTCTTTTAATCAACAATTTATGAAGGTTGTTGGCAGAGTTCAAACAGTTTCACACGTTGCATTTATA‑‑ACAGATA                                                                            <  2:743583/76‑1                     TTATGAAGGTTGTTGGCAGAGTTCAAACAGTTTCACACGTTGCATTTATAATACCGATAGAAATAAGAAGCAAAGA                                                           <  2:297421/76‑1                         GAAGGTTGTTGGCAGAGTTCAAACAGTTTCACACGTTGCATTTATA‑‑ACAGATAGAAATAATAAGCAAAGAGATATA                                                     <  2:733835/76‑1                           AGGTTGTTGGCAGAGTTCAAACAGTTTCACACGTTGCATTTATA‑‑ACAGATAGAAATAAAAAGCTAAGAGATATATA                                                   <  2:236028/76‑1                                                                             ATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGTTTCTGATTTAAACCCCATTAA   <  1:167671/76‑1                                                                              TAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGTTTCTGATTTAAACCCCATTAAA  <  2:369181/76‑1                                                                                                                                                           GGATTCTTTTAATCAACAATTTATGAAGGTTGTTGGCAGAGTTCAAACAGTTTCACACGTTGCATTTATA‑‑ACAGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2037465‑2037389 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGTTTCTGATTTAAACCCCATTAAA  >  REL606/2037953‑2038026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.