| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2037389 = | 30 (0.760) | 3 (0.080) | 3/142 | 4.7 | 7.9% | coding (742/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | 2037953 = | 42 (1.120) | coding (178/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGTCTACTATTAGAATCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGTTTCTGATTTAAACCCCATTAAA > REL606/2037879‑2038026 | cGGTCTACTATTAGAATCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGa > 1:1185637/1‑76 (MQ=255) ggTCTACTATTAGAATCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGaa < 1:1040287/76‑1 (MQ=255) ggTCTACTATTAGAATCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGaa > 1:369181/1‑76 (MQ=255) ggTCTACTATTAGAATCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGaa < 1:31687/76‑1 (MQ=255) tCTACTATTAGAATCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGTTAGAaat < 1:454593/76‑1 (MQ=255) tCTACTATTAGAATCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAaat > 1:78336/1‑76 (MQ=255) ctactaTTAGAATCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAaata > 1:928914/1‑76 (MQ=255) actaTTAGAATCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAaataat < 1:925758/76‑1 (MQ=255) ttAGAATCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGc < 1:765047/76‑1 (MQ=255) gAATCCGCTAATTTTGTTGTAAGTGGTTTTATTTTTGCCAAGCCATTATATAATACCGATAGAAATAATAAGCTaa < 1:635318/76‑1 (MQ=255) gAATCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTaa > 2:59176/1‑76 (MQ=255) gAATCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTaa < 1:341434/76‑1 (MQ=255) aTCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAaga < 1:297421/76‑1 (MQ=255) cAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAgaga < 1:1071635/76‑1 (MQ=255) tAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGatata < 1:518229/76‑1 (MQ=255) tAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGatata < 1:733835/76‑1 (MQ=255) aaTTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGatgtat > 1:717595/1‑76 (MQ=255) aaTTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGatatat > 2:762761/1‑76 (MQ=255) aTTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGAtatata < 1:236028/76‑1 (MQ=255) aTTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGAtatata > 2:117846/1‑76 (MQ=255) ttttGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATaa < 1:22093/76‑1 (MQ=255) ttgttgTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAAt < 1:862887/76‑1 (MQ=255) ttgtAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTag > 2:618339/1‑76 (MQ=255) ttgtAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTag > 2:533728/1‑76 (MQ=255) gTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTg < 1:912500/76‑1 (MQ=255) gTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTg > 1:444850/1‑76 (MQ=255) gTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAat < 2:185989/76‑1 (MQ=255) ttttATTTTTGCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAatt < 1:295811/76‑1 (MQ=255) tttATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAatta < 1:243905/76‑1 (MQ=255) aTTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAAttatta < 1:13538/76‑1 (MQ=255) aTTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAAttatta > 1:1172150/1‑76 (MQ=255) ttttttCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTAc < 2:1078718/76‑1 (MQ=255) tttttCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACg > 1:313056/1‑76 (MQ=255) ttttCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGa > 2:92974/1‑76 (MQ=255) ttCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACa < 1:360978/76‑1 (MQ=255) ccAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGt < 1:92974/76‑1 (MQ=255) ccAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGt > 1:1089776/1‑76 (MQ=255) cATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGTTTCTGa < 1:289937/76‑1 (MQ=255) tatataATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGTTTCTGAttt > 1:1011256/1‑76 (MQ=255) tatataATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGTTTCTGAttt < 1:1164252/76‑1 (MQ=255) ataataCCGATAGCAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGTTTCTGATTTaga > 1:842763/1‑74 (MQ=255) aCCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGTTTCTGATTTAAACCCCa > 1:355966/1‑76 (MQ=255) aTAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGTTTCTGATTTAAACCCCATTaa < 1:167671/76‑1 (MQ=255) tAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGTTTCTGATTTAAACCCCATTaaa < 2:369181/76‑1 (MQ=255) | CGGTCTACTATTAGAATCAGCTAATTTTGTTGTAAGTGGTTTTATTTTTTCCAATCCATTATATAATACCGATAGAAATAATAAGCTAAGAGATATATAAATTAGAGATTGAATTATTACGACAGTTTCTGATTTAAACCCCATTAAA > REL606/2037879‑2038026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |