| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 4,168,970 | Δ3 bp | coding (4010‑4012/4224 nt) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 4168970 | 4168972 | 3 | 33 [0] | [0] 33 | rpoC | DNA‑directed RNA polymerase subunit beta' |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4168969 | 0 (0.000) | 33 (0.850) | 24/148 | 0.6 | 100% | coding (4009/4224 nt) | rpoC | DNA‑directed RNA polymerase subunit beta' |
| ? | REL606 | 4168973 = | 0 (0.000) | coding (4013/4224 nt) | rpoC | DNA‑directed RNA polymerase subunit beta' | |||||
GTCTCTGGCAACCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4168896‑4168969‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGGGCAAACGCGACGAACTGCGCGGCCTGAAAGAGAACGTTATCGTGGGTCGTCTGATCCCGGCAGGTAC > REL606/4168973‑4169042 GTCTCTGGCAACCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCG > 1:72239/1‑76 CTCTGGCAACCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGG < 2:717323/76‑1 CTGGCAACCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCA > 2:36065/1‑76 AACCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGC > 2:603461/1‑76 AACCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGC > 1:601675/1‑76 GAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACG < 1:8349/76‑1 GAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACG < 2:409996/76‑1 GAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACG < 1:921914/76‑1 GAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACG > 1:1023710/1‑76 TCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAAC > 2:1065353/1‑76 TCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAAC < 2:1136312/76‑1 CCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAACT > 1:458946/1‑76 CCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAACT > 1:39855/1‑76 CCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCT < 2:484281/76‑1 CGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGTCCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTG < 2:628719/76‑1 CGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAATCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTG < 2:1136748/76‑1 CGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTG < 2:550702/76‑1 GCGGCATCGTTCCAGGAGACCGCTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGA < 2:499273/76‑1 GCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGA < 2:1269810/76‑1 CGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGAA < 1:14101/76‑1 GGCATCGTTCCAGGAGCCCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGAAA < 1:444528/76‑1 GGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGAAA < 2:315120/76‑1 ATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGAAAGAG < 1:1065353/76‑1 TCGTTCCAGGAGACCACTCGCGTGGTGACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGAAAGAGA < 1:761319/76‑1 CGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAGCGAAACGAACTGGGCGGCCTGATAGAGga > 2:456473/1‑74 TTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGAAAGAGAACG > 2:1175314/1‑76 TCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACACGCCGAACACCCCGGCCCGACAGAGAACGT > 2:352122/1‑76 AGGAGACCCCTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGAAAGAGAACGTTAT < 2:1018912/76‑1 CCACTCGCGTGCTGACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGAAAGAGAACGTTATCGTGGG > 1:1137991/1‑76 GACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGAAAGAGAACGTTATCGTGGGTCGTCTGATCCCG > 1:68654/1‑76 GACCGAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGAAAGAGAACGTTATCGTGGGTCGTCTGATCCCG > 2:753937/1‑76 GAAGCAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGAAAGAGAACGTTATCGTGGGACGTCTGATCCCGGCAG > 2:999065/1‑76 CAGCCGCGGGCAAACGCGACGAACTGCGCGGCCTGAAAGAGAACGTTATCGTGGGTCGTCTGATCCCGGCAGGTAC > 2:1084604/1‑76 GTCTCTGGCAACCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4168896‑4168969‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGGGCAAACGCGACGAACTGCGCGGCCTGAAAGAGAACGTTATCGTGGGTCGTCTGATCCCGGCAGGTAC > REL606/4168973‑4169042 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |