Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | REL606 | 4,168,970 | Δ3 bp | coding (4010‑4012/4224 nt) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 4168970 | 4168972 | 3 | 33 [0] | [0] 33 | rpoC | DNA‑directed RNA polymerase subunit beta' |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 4168969 | 0 (0.000) | 33 (0.850) | 24/148 | 0.6 | 100% | coding (4009/4224 nt) | rpoC | DNA‑directed RNA polymerase subunit beta' |
? | REL606 | 4168973 = | 0 (0.000) | coding (4013/4224 nt) | rpoC | DNA‑directed RNA polymerase subunit beta' |
GTCTCTGGCAACCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGTTGCGGGCAAACGCGACGAACTGCGCGGCCTGAAAGAGAACGTTATCGTGGGTCGTCTGATCCCGGCAGG > REL606/4168896‑4169039 | gTCTCTGGCAACCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcg > 1:72239‑M1/1‑74 (MQ=255) ctctGGCAACCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcggg < 2:717323‑M1/76‑5 (MQ=255) ctGGCAACCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggca > 2:36065‑M1/1‑70 (MQ=255) aaCCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgc > 2:603461‑M1/1‑65 (MQ=255) aaCCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgc > 1:601675‑M1/1‑65 (MQ=255) gAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacg < 1:8349‑M1/76‑16 (MQ=255) gAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacg < 2:409996‑M1/76‑16 (MQ=255) gAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacg < 1:921914‑M1/76‑16 (MQ=255) gAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacg > 1:1023710‑M1/1‑61 (MQ=255) tCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaac > 2:1065353‑M1/1‑58 (MQ=255) tCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaac < 2:1136312‑M1/76‑19 (MQ=255) ccTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaact > 1:458946‑M1/1‑57 (MQ=255) ccTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaact > 1:39855‑M1/1‑57 (MQ=255) ccGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcct < 2:484281‑M1/76‑29 (MQ=255) cgcgGCATCGTTCCAGGAGACCACTCGCGTGCTGTCCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctg < 2:628719‑M1/76‑30 (MQ=255) cgcgGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAATCAGCCGcgggcaaacgcgacgaactgcgcggcctg < 2:1136748‑M1/76‑30 (MQ=255) cgcgGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctg < 2:550702‑M1/76‑30 (MQ=255) gcgGCATCGTTCCAGGAGACCGCTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctga < 2:499273‑M1/76‑31 (MQ=255) gcgGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctga < 2:1269810‑M1/76‑31 (MQ=255) cgGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctgaa < 1:14101‑M1/76‑32 (MQ=255) ggCATCGTTCCAGGAGCCCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctgaaa < 1:444528‑M1/76‑33 (MQ=255) ggCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctgaaa < 2:315120‑M1/76‑33 (MQ=255) aTCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctgaaagag < 1:1065353‑M1/76‑36 (MQ=255) tCGTTCCAGGAGACCACTCGCGTGGTGACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctgaaagaga < 1:761319‑M1/76‑37 (MQ=255) cGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaagcgaaacgaactgggcggcctgatagagga > 2:456473‑M1/1‑39 (MQ=255) ttCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctgaaagagaacg > 2:1175314‑M1/1‑37 (MQ=255) tCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacacgccgaacaccccggcccgacagagaacgt > 2:352122‑M1/1‑36 (MQ=255) aGGAGACCCCTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctgaaagagaacgttat < 2:1018912‑M1/76‑44 (MQ=255) ccACTCGCGTGCTGACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctgaaagagaacgttatcgtggg > 1:1137991‑M1/1‑27 (MQ=255) gACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccg > 1:68654‑M1/1‑14 (MQ=255) gACCGAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccg > 2:753937‑M1/1‑14 (MQ=255) gAAGCAGCCGcgggcaaacgcgacgaactgcgcggcctgaaagagaacgttatcgtgggacgtctgatcccggcag > 2:999065‑M1/1‑10 (MQ=255) cagcCGcgggcaaacgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggcaggtac > 2:1084604‑M1/1‑6 (MQ=255) | GTCTCTGGCAACCGAGTCCTTCATCTCCGCGGCATCGTTCCAGGAGACCACTCGCGTGCTGACCGAAGCAGCCGTTGCGGGCAAACGCGACGAACTGCGCGGCCTGAAAGAGAACGTTATCGTGGGTCGTCTGATCCCGGCAGG > REL606/4168896‑4169039 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |