New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	1211753 =	42 (1.900)	3 (0.150)	3/140	2.7	7.1%	intergenic (+11/+92)	icdA/ycgW	isocitrate dehydrogenase/hypothetical protein
	?	REL606	1212292 =	39 (1.890)					intergenic (‑124/+572)	ycgW/ycgX	hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

ATATGCTCGATATGCTATTAATAATACCTACATAAATAAAACAACGGGCGTGTTATACGCCCGTTGCAATATTAAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1211830‑1211753 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaAAATTTAAAGCAAGGAATCTCAATGGATGTTAAACAAAATGAGATTTAGTGAAAACAATAAATTATTCAC  >  REL606/1212292‑1212361                                                                                                                                                      ATATGCTCGATATGCTATTAATAATACCTACATAAATAAAACAACGGGCGTGTTATACGCCCGTTGCAATATTAAA                                                                          >  2:98462/1‑76  TATGCTCGATATGCTATTAATAATACCTACATAAATAAAACAACGGGCGTGTTATACGCCCGTTGCAATATTAAAC                                                                         <  2:216748/76‑1      CTCGATATGCTATTAATAATACCTACATAAATAAAACAACGGGCGTGTTTTATTCCCCCTGCAAAATTAAAAAAAA                                                                     >  1:259537/1‑76                       AATACCTACATAAAAAAAACAACGGGCGTGTTATACGCCCGTTGCAATATTAAACAAAATTTAAAGCAAGGAATCT                                                    <  2:485296/76‑1                        ATACCTACATAAAGAAAACAACGGGCGTGTTATACGCCGGTTGCAATATTAAACAAAATTTAAAGCAAGGAATCTC                                                   <  2:611626/76‑1                                                                         nAAACAAAATTTAAAGCAAGGAATCTCAATGGATGTTAAACAAAATGAGATTTAGTGAAAACAATAAATTATTCAC  >  1:576329/2‑76                                                                                                                                                      ATATGCTCGATATGCTATTAATAATACCTACATAAATAAAACAACGGGCGTGTTATACGCCCGTTGCAATATTAAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1211830‑1211753 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaAAATTTAAAGCAAGGAATCTCAATGGATGTTAAACAAAATGAGATTTAGTGAAAACAATAAATTATTCAC  >  REL606/1212292‑1212361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.