Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | REL606 | 2,298,759 | Δ4 bp | coding (321‑324/1359 nt) | glpT ← | sn‑glycerol‑3‑phosphate transporter |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 2298759 | 2298762 | 4 | 13 [0] | [0] 13 | glpT | sn‑glycerol‑3‑phosphate transporter |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2298758 | 0 (0.000) | 13 (0.590) | 11/150 | 0.9 | 100% | coding (325/1359 nt) | glpT | sn‑glycerol‑3‑phosphate transporter |
? | REL606 | 2298763 = | 0 (0.000) | coding (320/1359 nt) | glpT | sn‑glycerol‑3‑phosphate transporter |
AACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTGCCGCCGCCAGAATCAAACCTGCGGGCAGGAAAACGCGCGGATTCGAGCGATCCGATACCGA > REL606/2298689‑2298830 | aaccGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGCCGCCCATGGCACAAAGCCCATAAAatcact > 2:499326‑M1/1‑70 (MQ=255) gCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAAatcactgccg < 2:344375‑M1/76‑11 (MQ=255) acaacaGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAAatcactgccgccgccaga > 2:324768‑M1/1‑58 (MQ=255) caacaGTACAAACATCACCGCAATGCTCGACGTCTCCCATGGCACAAAGCCCATAAAatcactgccgccgccagaa < 2:368750‑M1/76‑20 (MQ=255) tACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAAatcactgccgccgccagaatcaaac > 2:244760‑M1/1‑51 (MQ=255) cAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAAatcactgccgccgccagaatcaaacct > 2:564491‑M1/1‑49 (MQ=255) tCGACGTCGCCCATGGCACAAAGCCCATAAAatcactgccgccgccagaagcaaacctgcgggcaggaaaacgctc > 2:485765‑M1/1‑31 (MQ=255) cGACGTCGCCCATGGCACAAAGCCCATAAAatcactgccgccgccagaatcaaacctgcgggcaggaaaacgcgcg > 2:63711‑M1/1‑30 (MQ=255) cGCCCATGGCACAAAGCCCATAAAatcactgccgccgccagaatcaaacctgcgggcaggaaaacgcgcggcttcg > 1:73712‑M1/1‑24 (MQ=255) cGCCCATGGCACAAAGCCCATAAAatcactgccgccgccagaatcaaacctgcgggcaggaaaacgcgcggattcg > 2:136968‑M1/1‑24 (MQ=255) gtgGCACAAAGCCCATAAAatcactgccgccgccagaatcaaacctgcgggcaggaaaacgcgcggattcgagcga > 1:397034‑M1/2‑19 (MQ=255) cccATAAAatcactgccgccgccagaatcaaacctgcgggcaggaaaacgcgcggattcgagcgatccgatacgga > 1:545007‑M1/1‑8 (MQ=255) tAAAatcactgccgccgccagaatcaaacctgcgggcaggaaaacgcgcggattcgagcgatccgataccgaaccc > 1:597873‑M1/1‑4 (MQ=255) | AACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTGCCGCCGCCAGAATCAAACCTGCGGGCAGGAAAACGCGCGGATTCGAGCGATCCGATACCGA > REL606/2298689‑2298830 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |