Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3893609–3894994 | 3901930 | 6937–8322 | 4 [3] | [0] 23 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3652533 | NA (NA) | 23 (1.070) | 20/146 | 0.2 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
GGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGG > REL606/3901859‑3901993 | gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGtt < 2:636323‑M2/4‑1 (MQ=255) tccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGcc > 1:106627‑M2/70‑76 (MQ=255) tccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGcc > 2:376269‑M2/70‑76 (MQ=255) aattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAg > 1:582872‑M2/67‑76 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGgtgcc > 2:325246‑M2/62‑74 (MQ=255) tatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCa > 2:669821‑M2/60‑76 (MQ=255) tatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCa < 1:683802‑M2/17‑1 (MQ=255) atcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAg < 1:277201‑M2/18‑1 (MQ=255) atcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAg > 1:423398‑M2/59‑76 (MQ=255) tcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTg > 2:709744‑M2/52‑64 (MQ=255) tcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTg < 1:709744‑M2/13‑1 (MQ=255) tcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcgccg < 2:699102‑M2/25‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCaa < 2:202792‑M2/29‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCaa < 2:375011‑M2/29‑1 (MQ=255) gcctcgtgtttaactgtccacctttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACgggg < 2:553099‑M2/37‑1 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGc < 2:312002‑M2/38‑1 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGc < 2:60745‑M2/38‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaaaa > 1:174690‑M2/33‑76 (MQ=255) actgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAATTTGGc > 2:702613‑M2/28‑76 (MQ=255) aactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccacca > 1:461326‑M2/21‑76 (MQ=255) ctttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGa > 2:470682‑M2/19‑76 (MQ=255) ttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCg < 2:148658‑M2/62‑1 (MQ=255) tggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCgg < 2:452230‑M2/63‑1 (MQ=255) | GGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGG > REL606/3901859‑3901993 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |