Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	583464	583640	177	19 [17]	[18] 20	tfaX/appY	pseudogene, DLP12 prophage,Phage or Prophage Related/global transcriptional activator, DLP12 prophage

TGACTTGATAAGAAATGCAAGTAAAAATGATACTCTTTTTATTTTAAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAAACAACATACATATAA  >  NC_000913/583350‑583529                                                                                                                  |                                                                   tgACTTGATAAGGAATGCAAGTAAAAATGATACTCTTTTTATTTTAAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAg                                                                 >  2:1535738/1‑117 (MQ=255) tgACTTGATAAGGAATGCAAGTAAAAATGATACTCTTTTTATTTTAAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAg                                                                 <  1:1535738/117‑1 (MQ=255)                                aCTCTTTTTATTTTAAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAaacaac            <  1:1404315/139‑1 (MQ=255)                                    tttttATTTTAAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAaac               <  1:981238/132‑1 (MQ=255)                                    ttattattttaGATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTCCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAaac               >  2:981238/4‑132 (MQ=255)                                           tttaAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGaaa                                 <  1:866880/107‑1 (MQ=255)                                           tttaAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGaaa                                 >  2:866880/1‑107 (MQ=255)                                                                  tatataGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATaaa                                                                    <  1:61192/49‑1 (MQ=255)                                                                  tatataGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATaaa                                                                    >  2:61192/1‑49 (MQ=255)                                                                    tataGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCg                                                      <  1:813259/61‑1 (MQ=255)                                                                    tataGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCg                                                      <  1:1347097/61‑1 (MQ=255)                                                                    tataGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCg                                                      >  2:1347097/1‑61 (MQ=255)                                                                    tataGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCg                                                      >  2:813259/1‑61 (MQ=255)                                                                       aGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTg                                    <  1:1601689/76‑1 (MQ=255)                                                                       aGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTg                                    >  2:1601689/1‑76 (MQ=255)                                                                            gagGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAaacaac            <  2:1454955/95‑1 (MQ=255)                                                                            gagGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAaacaac            >  1:1454955/1‑95 (MQ=255)                                                                            gagGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAAACAACATACATataa  >  1:49145/1‑105 (MQ=255)                                                                            gagGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAAACAACATACATataa  <  2:49145/105‑1 (MQ=255)                                                                                                                  |                                                                   TGACTTGATAAGAAATGCAAGTAAAAATGATACTCTTTTTATTTTAAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAAACAACATACATATAA  >  NC_000913/583350‑583529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑