New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3855959	47 (0.820)	16 (0.280)	7/200	4.5	22.6%	coding (12/363 nt)	yidG	inner membrane protein
	?	NC_000913	= 3855988	63 (1.100)					coding (320/348 nt)	yidH	DUF202 family inner membrane protein
Rejected: Coverage evenness skew score above cutoff.

CATGCCCGCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCA  >  NC_000913/3855827‑3856093                                                                                                                                     |                                                                                                                                       cATGCCCGCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGAGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTCGCTTTGCGGTTATcc                                                                                                                                  >  1:997920/1‑139 (MQ=255)  aTGCCCGCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCg                                                                                                                                 <  1:1358251/139‑1 (MQ=255)         ccTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCg                                                                                                                                 >  1:10893/1‑132 (MQ=255)         ccTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCg                                                                                                                                 <  2:10893/132‑1 (MQ=255)            ggTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCg                                                                                                                                 >  1:1025216/1‑129 (MQ=255)            ggTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCg                                                                                                                                 <  2:1025216/129‑1 (MQ=255)             gTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAacac                                                                                                                      <  1:671613/139‑1 (MQ=255)             gTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAacac                                                                                                                      <  1:502137/139‑1 (MQ=255)                ccAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAg                                                                                                                   <  1:269756/139‑1 (MQ=255)                  aGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCgg                                                                                                                                <  2:789437/124‑1 (MQ=255)                  aGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCgg                                                                                                                                >  1:789437/1‑124 (MQ=255)                              tAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCgg                                                                                                                                >  2:884893/1‑112 (MQ=255)                              tAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCgg                                                                                                                                <  1:884893/112‑1 (MQ=255)                                           cAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCa                                                                                               <  2:1153973/132‑1 (MQ=255)                                           cAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCa                                                                                               >  1:1153973/1‑132 (MQ=255)                                                cgcCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCgg                                                                                                                                        >  2:739082/1‑86 (MQ=255)                                                cgcCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCgg                                                                                                                                        <  1:739082/86‑1 (MQ=255)                                                cgcCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAata                                                                                   >  1:827314/1‑139 (MQ=255)                                                   cGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATa                                                                                                            <  2:867350/111‑1 (MQ=255)                                                   cGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATa                                                                                                            >  1:867350/1‑111 (MQ=255)                                                   cGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTa                                                                                <  2:864849/139‑1 (MQ=255)                                                                       aaCCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTg                                                            >  2:1159312/1‑139 (MQ=255)                                                                       aaCCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTg                                                            <  2:827314/139‑1 (MQ=255)                                                                        aCCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGt                                                           <  1:1067535/139‑1 (MQ=255)                                                                           aCGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTgg                                                        >  2:845718/1‑139 (MQ=255)                                                                                 gTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCggtt                                                                                                                                      >  1:584077/1‑53 (MQ=255)                                                                                 gTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCggtt                                                                                                                                      <  2:584077/55‑3 (MQ=255)                                                                                   gATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCa                                                                                               <  2:1159009/92‑1 (MQ=255)                                                                                   gATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCa                                                                                               >  1:1159009/1‑92 (MQ=255)                                                                                       tgCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCgg                                                                                                                                <  2:1071199/55‑1 (MQ=255)                                                                                       tgCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCgg                                                                                                                                >  1:1071199/1‑55 (MQ=255)                                                                                       tgCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATc                                                                                                      >  2:1227217/1‑81 (MQ=255)                                                                                       tgCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATc                                                                                                      <  1:1227217/81‑1 (MQ=255)                                                                                       tgCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATtaataa                                                                >  2:955076/1‑119 (MQ=255)                                                                                       tgCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATtaataa                                                                <  1:955076/119‑1 (MQ=255)                                                                                        gcgcTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAg                                                               >  2:496775/1‑119 (MQ=255)                                                                                        gcgcTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAg                                                               <  1:496775/119‑1 (MQ=255)                                                                                        gcgcTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTc                                           <  1:302214/139‑1 (MQ=255)                                                                                           cTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGa                                                                       >  1:1172189/1‑108 (MQ=255)                                                                                           cTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGa                                                                       <  2:1172189/108‑1 (MQ=255)                                                                                           cTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCctc                                        >  2:625994/1‑139 (MQ=255)                                                                                              cGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCAt                                                                                        <  1:367772/88‑1 (MQ=255)                                                                                              cGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCAt                                                                                        >  2:367772/1‑88 (MQ=255)                                                                                                     aGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATc                                                                                       >  1:746891/1‑82 (MQ=255)                                                                                                     aGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATc                                                                                       <  2:746891/82‑1 (MQ=255)                                                                                                      gTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACg                                                                                             <  2:718463/75‑1 (MQ=255)                                                                                                      gTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACg                                                                                             >  1:718463/1‑75 (MQ=255)                                                                                                      gTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATtaa                                                                   >  2:1509684/1‑101 (MQ=255)                                                                                                      gTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATtaa                                                                   <  1:1509684/101‑1 (MQ=255)                                                                                                       tCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATGAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCAt                            <  2:997920/139‑1 (MQ=255)                                                                                                            ggTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAAt                                                                         <  2:1488656/89‑1 (MQ=255)                                                                                                            ggTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAAt                                                                         >  1:1488656/1‑89 (MQ=255)                                                                                                                ggCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTc                   <  1:625994/139‑1 (MQ=255)                                                                                                                 gCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCa                                                                                               <  2:994986/62‑1 (MQ=255)                                                                                                                 gCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCa                                                                                               >  1:994986/1‑62 (MQ=255)                                                                                                                 gCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGc                              >  2:1000645/1‑127 (MQ=255)                                                                                                                 gCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGc                              <  1:1000645/127‑1 (MQ=255)                                                                                                                 gCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCa                  >  2:797432/1‑139 (MQ=255)                                                                                                                  cAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCAt                 <  1:797432/139‑1 (MQ=255)                                                                                                                         tCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACg                                                                                             <  2:1007190/56‑1 (MQ=255)                                                                                                                         tCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACg                                                                                             >  1:1007190/1‑56 (MQ=255)                                                                                                                         tCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTaa          <  1:845718/139‑1 (MQ=255)                                                                                                                                 tGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCa  <  2:1015564/139‑1 (MQ=255)                                                                                                                                     |                                                                                                                                       CATGCCCGCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCA  >  NC_000913/3855827‑3856093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.