New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3855959	47 (0.820)	16 (0.280)	7/200	4.5	22.6%	coding (12/363 nt)	yidG	inner membrane protein
	?	NC_000913	= 3855988	63 (1.100)					coding (320/348 nt)	yidH	DUF202 family inner membrane protein
Rejected: Coverage evenness skew score above cutoff.

CAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCAAGTAGCCATACATCGCTAACCCGCCGGAAA  >  NC_000913/3855869‑3856123                                                                                                                        |                                                                                                                                        cAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCa                                                                                                                             <  2:1153973/132‑1 (MQ=255) cAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCa                                                                                                                             >  1:1153973/1‑132 (MQ=255)      cgcCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAata                                                                                                                 >  1:827314/1‑139 (MQ=255)         cGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTa                                                                                                              <  2:864849/139‑1 (MQ=255)                             aaCCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTg                                                                                          <  2:827314/139‑1 (MQ=255)                             aaCCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTg                                                                                          >  2:1159312/1‑139 (MQ=255)                              aCCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGt                                                                                         <  1:1067535/139‑1 (MQ=255)                                 aCGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTgg                                                                                      >  2:845718/1‑139 (MQ=255)                                         gATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCa                                                                                                                             >  1:1159009/1‑92 (MQ=255)                                         gATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCa                                                                                                                             <  2:1159009/92‑1 (MQ=255)                                             tgCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATc                                                                                                                                    >  2:1227217/1‑81 (MQ=255)                                             tgCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATc                                                                                                                                    <  1:1227217/81‑1 (MQ=255)                                             tgCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATtaataa                                                                                              <  1:955076/119‑1 (MQ=255)                                             tgCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATtaataa                                                                                              >  2:955076/1‑119 (MQ=255)                                              gcgcTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAg                                                                                             >  2:496775/1‑119 (MQ=255)                                              gcgcTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAg                                                                                             <  1:496775/119‑1 (MQ=255)                                              gcgcTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTc                                                                         <  1:302214/139‑1 (MQ=255)                                                 cTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGa                                                                                                     <  2:1172189/108‑1 (MQ=255)                                                 cTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGa                                                                                                     >  1:1172189/1‑108 (MQ=255)                                                 cTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCctc                                                                      >  2:625994/1‑139 (MQ=255)                                                    cGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCAt                                                                                                                      <  1:367772/88‑1 (MQ=255)                                                    cGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCAt                                                                                                                      >  2:367772/1‑88 (MQ=255)                                                           aGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATc                                                                                                                     <  2:746891/82‑1 (MQ=255)                                                           aGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATc                                                                                                                     >  1:746891/1‑82 (MQ=255)                                                            gTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACg                                                                                                                           <  2:718463/75‑1 (MQ=255)                                                            gTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACg                                                                                                                           >  1:718463/1‑75 (MQ=255)                                                            gTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATtaa                                                                                                 >  2:1509684/1‑101 (MQ=255)                                                            gTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATtaa                                                                                                 <  1:1509684/101‑1 (MQ=255)                                                             tCCTGGGTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATGAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCAt                                                          <  2:997920/139‑1 (MQ=255)                                                                  ggTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAAt                                                                                                       >  1:1488656/1‑89 (MQ=255)                                                                  ggTCGGCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAAt                                                                                                       <  2:1488656/89‑1 (MQ=255)                                                                      ggCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTc                                                 <  1:625994/139‑1 (MQ=255)                                                                       gCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCa                                                                                                                             >  1:994986/1‑62 (MQ=255)                                                                       gCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCa                                                                                                                             <  2:994986/62‑1 (MQ=255)                                                                       gCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGc                                                            >  2:1000645/1‑127 (MQ=255)                                                                       gCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGc                                                            <  1:1000645/127‑1 (MQ=255)                                                                       gCAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCa                                                >  2:797432/1‑139 (MQ=255)                                                                        cAATGCGTCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCAt                                               <  1:797432/139‑1 (MQ=255)                                                                               tCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACg                                                                                                                           <  2:1007190/56‑1 (MQ=255)                                                                               tCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACg                                                                                                                           >  1:1007190/1‑56 (MQ=255)                                                                               tCTGGCTTTGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTaa                                        <  1:845718/139‑1 (MQ=255)                                                                                       tGCGGTTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCa                                <  2:1015564/139‑1 (MQ=255)                                                                                         cggttATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCGATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCAAg                              >  2:703089/5‑139 (MQ=255)                                                                                         cggttATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCAAg                              >  2:622160/5‑139 (MQ=255)                                                                                               tCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCAAGTAGCCa                        <  1:1159312/139‑1 (MQ=255)                                                                                                      tACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCctct                                                                     <  1:718441/87‑1 (MQ=255)                                                                                                      tACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCctct                                                                     >  2:718441/1‑87 (MQ=255)                                                                                                      tACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCg                                                        <  1:834671/100‑1 (MQ=255)                                                                                                      tACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCg                                                        >  2:834671/1‑100 (MQ=255)                                                                                                      tACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCAAGTAGCCATACATCg                 >  1:1229761/1‑139 (MQ=255)                                                                                                         aacaCCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAg                                                                                                            <  2:1259646/45‑1 (MQ=255)                                                                                                         aacaCCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAg                                                                                                            >  1:1259646/1‑45 (MQ=255)                                                                                                         aacaCCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTc                                                                         <  2:253263/80‑1 (MQ=255)                                                                                                         aacaCCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTc                                                                         >  1:253263/1‑80 (MQ=255)                                                                                                                gTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCAAGTAGCCATACATCGCTAACccgcc       >  1:1115865/1‑139 (MQ=255)                                                                                                                 tCCCATAACGTTCACCGCCAAAACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCAAGTAGCCATACATCGCTAACccgccg      >  2:420060/1‑139 (MQ=255)                                                                                                                 tCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAg                                    >  1:569551/1‑109 (MQ=255)                                                                                                                 tCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAg                                    <  2:569551/109‑1 (MQ=255)                                                                                                                   ccATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCAAGTAGCCATACATCGCTAACCCGCCgg     <  1:187846/138‑1 (MQ=255)                                                                                                                   ccATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCAAGTAGCCATACATCGCTAACCCGCCgg     >  2:187846/1‑138 (MQ=255)                                                                                                                     aTAACGATCACGGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCGGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCAAGTAGCCATACATCGCTAACCCGCCGGaaa  >  2:1440198/1‑139 (MQ=255)                                                                                                                     aTAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCAAGTAGCCATACATCGCTAACCCGCCgg     >  1:560329/1‑136 (MQ=255)                                                                                                                     aTAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCAAGTAGCCATACATCGCTAACCCGCCgg     <  2:560329/136‑1 (MQ=255)                                                                                                                        |                                                                                                                                        CAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAGCTAATGATTAATAAGCTGTTGGTGTAGGGCAGGTCCTCTTTCAGACGCATCGCTTTTTCATTGCGTAACCAGCGCAAGTAGCCATACATCGCTAACCCGCCGGAAA  >  NC_000913/3855869‑3856123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.