| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,857,142 | 7 bp→GATAGTC | coding (50‑56/2562 nt) | mutS → | methyl‑directed mismatch repair protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2857142 | 2857148 | 7 | 33 [0] | [0] 33 | mutS | methyl‑directed mismatch repair protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2857141 | 0 (0.000) | 31 (0.690) +GATAGTC |
22/202 | 0.8 | 100% | coding (49/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| ? | NC_000913 | 2857149 = | 0 (0.000) | coding (57/2562 nt) | mutS | methyl‑directed mismatch repair protein | |||||
ACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTATCTCAGGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGCGTCGCAACTGCTGGATATTTCACTGACCAAACGCGGTGCTTCG > NC_000913/2857038‑2857275 | aCGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctg < 2:915426‑M1/139‑36 (MQ=255) cGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGCAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgc > 2:106168‑M1/1‑103 (MQ=255) aTCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatg > 1:616596‑M1/1‑89 (MQ=255) tttAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgattttta > 2:239717‑M1/1‑78 (MQ=255) atatCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaa < 1:239717‑M1/139‑66 (MQ=255) atatCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaa < 2:807452‑M1/139‑66 (MQ=255) atatCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaa < 2:616596‑M1/139‑66 (MQ=255) atatCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaa < 2:491132‑M1/139‑66 (MQ=255) tatCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaac < 1:762566‑M1/139‑67 (MQ=255) gggAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaa < 2:54905‑M1/133‑66 (MQ=255) gggAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaa > 1:54905‑M1/1‑68 (MQ=255) gggAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaa < 1:39891‑M1/133‑66 (MQ=255) gggAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcacgagatcctgctgttttaccggatgggtgatttttatgaa > 2:39891‑M1/1‑68 (MQ=255) cATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaactgttttatgacgacgcaaaacgc > 1:615439‑M1/1‑50 (MQ=255) cATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtga < 2:564107‑M1/105‑56 (MQ=255) cATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtga > 1:564107‑M1/1‑50 (MQ=255) aGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaactgttttatgacgacgcaaaacgcgcgt < 1:106168‑M1/139‑94 (MQ=255) tGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaactgttttatgacgacgcaaaacgcgcgtcg > 2:350883‑M1/1‑44 (MQ=255) cAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaactgttttatgacgacgcaaaacgcgcgtcgca > 2:149253‑M1/1‑42 (MQ=255) aaTTTCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcacagcatcccgagatcctgctgttttaccggatgggtgatttttatgaactgttttatgacgacgcaaaacgcgcgtcgcaactgctgg > 2:395227‑M1/1‑34 (MQ=255) ttCGACGCCCATACGCCCATGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaactgttttatgacgacgcaaaacgcgcgtcgcaactgctggata < 2:560166‑M1/139‑109 (MQ=255) ttCGACGCCCATACGCCCATGATGCAGCAGTgatagtc < 2:831467‑M1/38‑8 (MQ=255) ttCGACGCCCATACGCCCATGATGCAGCAGTgatagtc > 1:831467‑M1/1‑31 (MQ=255) cgcccatacgcccatGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaactgttttatgacgacgcaaaacgcgcgtcgcaactgctggatatttca < 2:956986‑M1/139‑114 (MQ=255) ccatGATGCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaactgttttatgacgacgcaaaacgcgcgtcgcaactgctggatatttcactgaccaaacg < 1:350883‑M1/139‑125 (MQ=255) atgatgCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaactgttttatgacgacgcaaaacgcgcgtcgcaactgctggatatttcactgaccaaacgcg > 2:233351‑M1/1‑13 (MQ=255) atgatgCAGCAGTgatagtcgctgaaagcccagcatcc < 1:331502‑M1/38‑26 (MQ=255) atgatgCAGCAGTgatagtcgctgaaagcccagcatcc > 2:331502‑M1/1‑13 (MQ=255) tgatgCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaac > 2:54157‑M1/1‑12 (MQ=255) tgatgCAGCAGTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaac < 1:54157‑M1/78‑67 (MQ=255) cagcagTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatggg > 2:437742‑M1/1‑7 (MQ=255) cagcagTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatggg < 1:437742‑M1/59‑53 (MQ=255) gcagTgatagtcgctgaaagcccagcatcccgagatcctgctgttttaccggatgggtgatttttatgaactgttttatgacgacgcaaaacgcgcgtcgcaactgctggatatttcactgaccaaacgcggtgcttcg > 2:476617‑M1/1‑5 (MQ=255) | ACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTATCTCAGGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGCGTCGCAACTGCTGGATATTTCACTGACCAAACGCGGTGCTTCG > NC_000913/2857038‑2857275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |