| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,857,142 | 7 bp→GATAGTC | coding (50‑56/2562 nt) | mutS → | methyl‑directed mismatch repair protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2857142 | 2857148 | 7 | 33 [0] | [0] 33 | mutS | methyl‑directed mismatch repair protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2857141 | 0 (0.000) | 31 (0.690) +GATAGTC |
22/202 | 0.8 | 100% | coding (49/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| ? | NC_000913 | 2857149 = | 0 (0.000) | coding (57/2562 nt) | mutS | methyl‑directed mismatch repair protein | |||||
ACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTATCTCAGGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGCGTCGCAACTGCTGGATATTTCACTGACCAAACGCGGTGCTTCG > NC_000913/2857038‑2857275 | acgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCctg < 2:915426‑M2/28‑1 (MQ=255) cgaaaataaaaaccatcacaccccatttaatatcagggaaccggacataaccccatgagtgcaatagcaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCctgc > 2:106168‑M2/111‑139 (MQ=255) atcacaccccatttaatatcagggaaccggacataaccccatgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATg > 1:616596‑M2/97‑139 (MQ=255) tttaatatcagggaaccggacataaccccatgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTa > 2:239717‑M2/86‑139 (MQ=255) atatcagggaaccggacataaccccatgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGaa < 2:491132‑M2/58‑1 (MQ=255) atatcagggaaccggacataaccccatgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGaa < 1:239717‑M2/58‑1 (MQ=255) atatcagggaaccggacataaccccatgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGaa < 2:807452‑M2/58‑1 (MQ=255) atatcagggaaccggacataaccccatgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGaa < 2:616596‑M2/58‑1 (MQ=255) tatcagggaaccggacataaccccatgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAAc < 1:762566‑M2/59‑1 (MQ=255) gggaaccggacataaccccatgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGaa < 1:39891‑M2/58‑1 (MQ=255) gggaaccggacataaccccatgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGaa > 1:54905‑M2/76‑133 (MQ=255) gggaaccggacataaccccatgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGaa < 2:54905‑M2/58‑1 (MQ=255) gggaaccggacataaccccatgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCACGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGaa > 2:39891‑M2/76‑133 (MQ=255) catgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGa > 1:564107‑M2/58‑105 (MQ=255) catgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGa < 2:564107‑M2/48‑1 (MQ=255) catgagtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAAcgc > 1:615439‑M2/58‑139 (MQ=255) agtgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGCGt < 1:106168‑M2/86‑1 (MQ=255) tgcaatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGCGTCg > 2:350883‑M2/52‑139 (MQ=255) caatagaaaatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGCGTCGCa > 2:149253‑M2/50‑139 (MQ=255) aatttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCACAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGCGTCGCAACTGCTgg > 2:395227‑M2/42‑139 (MQ=255) ttcgacgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGCGTCGCAACTGCTGGata < 2:560166‑M2/101‑1 (MQ=255) cgcccatacgcccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGCGTCGCAACTGCTGGATATTTCa < 2:956986‑M2/106‑1 (MQ=255) ccatgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGCGTCGCAACTGCTGGATATTTCACTGACCAAAcg < 1:350883‑M2/117‑1 (MQ=255) atgatgcagcagtgatagtcGCTGAAAGCCCAGCATcc > 2:331502‑M2/21‑38 (MQ=255) atgatgcagcagtgatagtcGCTGAAAGCCCAGCATcc < 1:331502‑M2/18‑1 (MQ=255) atgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGCGTCGCAACTGCTGGATATTTCACTGACCAAAcgcg > 2:233351‑M2/21‑139 (MQ=255) tgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAAc > 2:54157‑M2/20‑78 (MQ=255) tgatgcagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAAc < 1:54157‑M2/59‑1 (MQ=255) cagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATggg > 2:437742‑M2/15‑59 (MQ=255) cagcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATggg < 1:437742‑M2/45‑1 (MQ=255) gcagtgatagtcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGCGTCGCAACTGCTGGATATTTCACTGACCAAACGCGGTGCTTcg > 2:476617‑M2/13‑139 (MQ=255) tcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATg > 2:104003‑M2/3‑58 (MQ=255) tcGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATg < 1:104003‑M2/56‑1 (MQ=255) | ACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTATCTCAGGCTGAAAGCCCAGCATCCCGAGATCCTGCTGTTTTACCGGATGGGTGATTTTTATGAACTGTTTTATGACGACGCAAAACGCGCGTCGCAACTGCTGGATATTTCACTGACCAAACGCGGTGCTTCG > NC_000913/2857038‑2857275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |