| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,432,994 | (C)6→9 | coding (567/1125 nt) | smf ← | DNA recombination‑mediator A family protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3432988 | 0 (0.000) | 53 (1.140) +CCC |
40/198 | 0.1 | 100% | coding (573/1125 nt) | smf | DNA recombination‑mediator A family protein |
| ? | NC_000913 | 3432989 = | 0 (0.000) | coding (572/1125 nt) | smf | DNA recombination‑mediator A family protein | |||||
TGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCCCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGACGCCATTTACCTGTAAGGCTGCT > NC_000913/3432850‑3433099 | tGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAgcg > 1:39880/1‑139 (MQ=255) ccAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGcccccccc < 2:549711‑M1/139‑9 (MQ=255) cGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgt > 2:101891‑M1/1‑127 (MQ=255) gAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgtt < 1:101891‑M1/139‑14 (MQ=255) aCCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttca > 1:286992‑M1/1‑124 (MQ=255) cGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAATGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccc < 2:786011‑M1/116‑8 (MQ=255) cGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccc > 1:786011‑M1/1‑109 (MQ=255) cTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGcccccccccctgttcaagcagactggcagcca > 1:1110530‑M1/1‑107 (MQ=255) ccaccaGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggc > 1:201769‑M1/1‑101 (MQ=255) aGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGcccccccccctgttcaagcagactggcagccagtcgggcatga < 2:1110530‑M1/139‑44 (MQ=255) cacCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcg < 1:985134‑M1/139‑48 (MQ=255) ttACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggat < 2:562255‑M1/139‑53 (MQ=255) ttACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggat > 2:551801‑M1/1‑87 (MQ=255) ttACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggat < 2:292744‑M1/139‑53 (MQ=255) ttACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggat > 1:878156‑M1/1‑87 (MQ=255) ttAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaat < 2:207482‑M1/139‑57 (MQ=255) ttAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaat < 1:864536‑M1/139‑57 (MQ=255) aCCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggta > 2:369915‑M1/1‑79 (MQ=255) aCCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaat > 2:414751‑M1/1‑79 (MQ=255) aCCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaat < 1:414751‑M1/135‑57 (MQ=255) aCCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcgggg > 1:511361‑M1/1‑79 (MQ=255) aCCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcgggg < 2:511361‑M1/129‑51 (MQ=255) aCTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGGGAGCGcccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtatt < 1:483199‑M1/139‑64 (MQ=255) cTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGcccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtatta > 1:532226‑M1/1‑75 (MQ=255) tGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaag > 2:687566‑M1/1‑74 (MQ=255) aaTGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtcca < 1:369915‑M1/139‑70 (MQ=255) tGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccctccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtcca < 2:649072‑M1/139‑72 (MQ=255) gCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtccattc < 2:878156‑M1/139‑73 (MQ=255) aTTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacgg > 1:467286‑M1/1‑64 (MQ=255) aTTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacgg < 2:467286‑M1/109‑46 (MQ=255) aTTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccc < 2:574403‑M1/67‑4 (MQ=255) aTTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccc > 1:574403‑M1/1‑64 (MQ=255) tcttcGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtccattccccaat < 2:201769‑M1/139‑79 (MQ=255) cGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtccattccccaatacag > 1:7272‑M1/1‑57 (MQ=255) ttGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtccattccccaatacagcaatgctga < 2:286992‑M1/139‑92 (MQ=255) tAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagctgactggcagccagtcgggcatgacggcggggatgaatggtattaagtccattccccaatacagcaatgctgacgc > 2:723798‑M1/1‑45 (MQ=255) ggggTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtatt < 2:220730‑M1/100‑63 (MQ=255) ggggTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtatt > 1:220730‑M1/1‑38 (MQ=255) gggTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtccattccccaatacagcaatgctgacgccatttacc > 1:663108‑M1/1‑37 (MQ=255) gggTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGcccccccccctgttcaagcagcctggcagccagtcgggcatgacggaggggatgaatggtattaagtccattccccaatacagcaatgctgacgccatttac > 1:592193‑M1/1‑37 (MQ=255) gTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtccattccccaatacagcaatgctgacgccatttacctg > 2:626067‑M1/1‑35 (MQ=255) gTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcag > 2:308538‑M1/1‑35 (MQ=255) gTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcag < 1:308538‑M1/63‑29 (MQ=255) tGGAACATCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtccattccccaatacagcaatgctgacgccatttacctgt < 1:551801‑M1/139‑106 (MQ=255) aCATCGAGGGGCAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtccattccccaatacagcaatgctgacgccatttatctgtaagg < 1:723798‑M1/139‑110 (MQ=255) aTCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtccattccccaatacagcaatgctgacgccatttacctgtaaggct < 1:687566‑M1/139‑112 (MQ=255) tCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaat < 1:906965‑M1/83‑57 (MQ=255) tCGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaat > 2:906965‑M1/1‑27 (MQ=255) cGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaat > 2:205736‑M1/1‑26 (MQ=255) cGAGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaat < 1:205736‑M1/82‑57 (MQ=255) aGGGTAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtcca < 1:704722‑M1/93‑70 (MQ=255) aGGGGAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgtatggtattaagtcca > 2:704722‑M1/1‑24 (MQ=255) gggAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtccattccccaatacagcaatgctgacgccatttacctg > 1:949798‑M1/1‑22 (MQ=255) gggAAATTCCGAGACGAGAGCGccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatgaatggtattaagtccattccccaatacagcaatgctgacgccatttacctg < 2:949798‑M1/126‑105 (MQ=255) gagCGcccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatga > 1:212804‑M1/1‑5 (MQ=255) gagCGcccccccccctgttcaagcagactggcagccagtcgggcatgacggcggggatga < 2:212804‑M1/60‑56 (MQ=255) | TGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCCCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGACGCCATTTACCTGTAAGGCTGCT > NC_000913/3432850‑3433099 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |