mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.1 revision aa8f2595a244
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 21 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,857,141 | 1 | . | G | 56.4% | 73.1 / 60.0 | 39 | coding (49/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 2,857,144 | 0 | C | G | 55.6% | 27.4 / 52.6 | 39 | L18V (CTC→GTC) ‡ | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 2,857,147 | 0 | A | . | 53.8% | 55.2 / 84.1 | 39 | coding (55/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 2,857,148 | 0 | G | . | 53.8% | 52.0 / 79.8 | 39 | coding (56/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 2,857,143 | 1 | . | A | 48.7% | 62.0 / 93.7 | 39 | coding (51/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 566,205 | 0 | T | C | 47.3% | ‑5.1 / 158.9 | 112 | pseudogene (172/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 2,857,145 | 0 | T | A | 46.2% | 10.3 / 57.5 | 39 | L18H (CTC→CAC) ‡ | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 2,857,146 | 0 | C | G | 46.2% | 10.7 / 65.2 | 39 | L18L (CTC→CTG) ‡ | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 566,277 | 0 | C | T | 45.6% | 39.8 / 123.5 | 103 | pseudogene (100/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 2,857,142 | 0 | A | G | 43.6% | 7.7 / 43.6 | 39 | Y17C (TAT→TGT) | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 2,857,143 | 0 | T | A | 43.6% | 20.0 / 52.5 | 39 | Y17* (TAT→TAA) | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 4,171,557 | 0 | C | A | 42.3% | 22.3 / 35.0 | 26 | intergenic (+13/‑80) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| * | NC_000913 | 566,245 | 0 | G | A | 40.9% | 66.9 / 88.9 | 88 | pseudogene (132/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,173 | 0 | C | G | 40.6% | 102.5 / 198.2 | 128 | pseudogene (204/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 4,296,060 | 0 | C | T | 26.0% | 130.7 / 38.7 | 73 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,518,992 | 0 | C | . | 25.7% | 267.0 / 87.7 | 101 | pseudogene (272/504 nt) | insB1 | IS1 transposase B,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related |
| * | NC_000913 | 566,323 | 0 | C | T | 23.2% | 160.1 / 39.7 | 82 | pseudogene (54/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,326 | 0 | T | C | 23.2% | 133.7 / 44.6 | 82 | pseudogene (51/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,332 | 0 | T | G | 21.7% | 184.0 / 63.7 | 83 | pseudogene (45/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 4,519,068 | 0 | T | A | 21.3% | 229.2 / 55.8 | 89 | pseudogene (348/504 nt) | insB1 | IS1 transposase B,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3674748 = | 58 (0.950) | 3 (0.050) | 3/204 | 5.6 | 4.6% | intergenic (+373/‑38) | yhjD/yhjE | inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter, membrane protein |
| ? | NC_000913 | 3674760 = | 70 (1.190) | intergenic (+385/‑26) | yhjD/yhjE | inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter, membrane protein | |||||
| * | ? | NC_000913 | = 939002 | 43 (0.710) | 3 (0.050) | 3/210 | 5.7 | 7.4% | coding (1009/1344 nt) | rarA | recombination intermediate processing DNA‑dependent ATPase |
| ? | NC_000913 | = 939036 | 32 (0.530) | coding (1043/1344 nt) | rarA | recombination intermediate processing DNA‑dependent ATPase | |||||
| * | ? | NC_000913 | = 2519188 | 57 (0.940) | 3 (0.050) | 3/212 | 5.8 | 5.2% | coding (376/393 nt) | yfeD | DUF1323 family putative DNA‑binding protein |
| ? | NC_000913 | = 2519219 | 53 (0.870) | intergenic (+14/+38) | yfeD/gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase | |||||