Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 4,619,478 | Δ9 bp | coding (1250‑1258/1323 nt) | deoA → | thymidine phosphorylase |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 4619478 | 4619486 | 9 | 66 [0] | [0] 65 | deoA | thymidine phosphorylase |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 4619477 | 0 (0.000) | 65 (1.320) | 40/202 | 0.1 | 100% | coding (1249/1323 nt) | deoA | thymidine phosphorylase |
? | NC_000913 | 4619487 = | 0 (0.000) | coding (1259/1323 nt) | deoA | thymidine phosphorylase |
GACACCATCGATTACAGCGTCGGCTTTACTGATATGGCGCGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGCGAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAG > NC_000913/4619351‑4619597 | caggcatctgacaccatcgattacagcgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCaa < 2:928383‑M2/3‑1 (MQ=255) ctgacaccatcgattacagcgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACt > 2:548375‑M2/130‑139 (MQ=255) caccatcgattacagcgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGcc > 1:1007800‑M2/126‑139 (MQ=255) atcgattacagcgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATa < 2:986443‑M2/18‑1 (MQ=255) cgattacagcgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATaaa > 2:1168960‑M2/120‑139 (MQ=255) cgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGaa > 2:843083‑M2/111‑139 (MQ=255) ggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGca > 1:1175430‑M2/107‑139 (MQ=255) ggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGca < 2:103253‑M2/33‑1 (MQ=255) atggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCaa < 1:708269‑M2/39‑1 (MQ=255) atggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCaa > 2:708269‑M2/95‑133 (MQ=255) atggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCt < 1:1168960‑M2/45‑1 (MQ=255) cgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGcc > 1:1106080‑M2/89‑139 (MQ=255) tctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGt > 2:79345‑M2/87‑139 (MQ=255) tctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGt > 1:411899‑M2/87‑139 (MQ=255) ctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTa < 2:418355‑M2/54‑1 (MQ=255) tgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTAt < 1:682384‑M2/55‑1 (MQ=255) ggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGca < 2:591115‑M2/33‑1 (MQ=255) ggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGca > 1:591115‑M2/83‑115 (MQ=255) ggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCa > 1:1162893‑M2/83‑139 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCAcc > 2:967113‑M2/78‑102 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCAcc < 1:967113‑M2/25‑1 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCAcc < 1:1196176‑M2/25‑1 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCAcc > 2:1196176‑M2/78‑102 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 2:1101605‑M2/62‑1 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 1:1058207‑M2/62‑1 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 2:1162893‑M2/62‑1 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 2:277337‑M2/62‑1 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 2:411899‑M2/62‑1 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 1:536507‑M2/62‑1 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 1:265579‑M2/62‑1 (MQ=255) ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 2:688759‑M2/62‑1 (MQ=255) caggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAAt < 2:1007800‑M2/63‑1 (MQ=255) aggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATa < 2:675612‑M2/64‑1 (MQ=255) ggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa < 1:102326‑M2/65‑1 (MQ=255) tagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg < 2:823284‑M2/67‑1 (MQ=255) tagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg < 1:548375‑M2/67‑1 (MQ=255) tagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg < 1:79345‑M2/67‑1 (MQ=255) tagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCACCGTATCAGCGAATAACg < 1:324547‑M2/67‑1 (MQ=255) acggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGta < 1:843083‑M2/70‑1 (MQ=255) ggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg > 2:970356‑M2/68‑134 (MQ=255) ggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg < 1:970356‑M2/67‑1 (MQ=255) tcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATAct > 1:76510‑M2/66‑139 (MQ=255) agcgtccgctggcggttatccacgcgaaagacgaaaacagctggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 2:250857‑M2/62‑1 (MQ=255) agcgtccgctggcggttatccacgcgaaagacgaaaacagctggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa > 1:250857‑M2/64‑125 (MQ=255) agcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACAAACTGTCTATCGCCGTATCAGCGAATAACGGTATActga > 2:1203812‑M2/64‑139 (MQ=255) agcgtccgctggcggttaaccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATActga > 1:676083‑M2/64‑139 (MQ=255) tccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa < 2:1158702‑M2/65‑1 (MQ=255) tccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa > 1:1158702‑M2/60‑124 (MQ=255) tccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATActgatctg < 2:971887‑M2/80‑1 (MQ=255) ggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCAtt > 2:930483‑M2/54‑139 (MQ=255) cggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa > 2:1149516‑M2/52‑113 (MQ=255) cggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa < 1:1149516‑M2/62‑1 (MQ=255) cggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa > 2:63492‑M2/52‑116 (MQ=255) cggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa < 1:63492‑M2/65‑1 (MQ=255) ggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTaa < 2:598603‑M2/89‑1 (MQ=255) acgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAg > 1:655788‑M2/43‑139 (MQ=255) cgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGc < 1:1203812‑M2/98‑1 (MQ=255) cgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCAc < 2:76510‑M2/100‑1 (MQ=255) aagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGa < 2:939883‑M2/103‑1 (MQ=255) gaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACg < 1:227522‑M2/108‑1 (MQ=255) gaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACg < 1:930483‑M2/108‑1 (MQ=255) aacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGgag < 2:676083‑M2/111‑1 (MQ=255) aacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCATATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGTGTACGgag > 1:739622‑M2/29‑139 (MQ=255) ctggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGc < 1:1124913‑M2/98‑1 (MQ=255) ctggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGc > 2:1124913‑M2/24‑121 (MQ=255) | GACACCATCGATTACAGCGTCGGCTTTACTGATATGGCGCGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGCGAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAG > NC_000913/4619351‑4619597 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |