Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,619,478	Δ9 bp	coding (1250‑1258/1323 nt)	deoA →	thymidine phosphorylase

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4619478	4619486	9	66 [0]	[0] 65	deoA	thymidine phosphorylase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4619477	0 (0.000)	65 (1.320)	40/202	0.1	100%	coding (1249/1323 nt)	deoA	thymidine phosphorylase
	?	NC_000913	4619487 =	0 (0.000)					coding (1259/1323 nt)	deoA	thymidine phosphorylase

GACACCATCGATTACAGCGTCGGCTTTACTGATATGGCGCGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGCGAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAG  >  NC_000913/4619351‑4619597                                                                                                                                         |                                                                                                               caggcatctgacaccatcgattacagcgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCaa                                                                                                              <  2:928383‑M2/3‑1 (MQ=255)        ctgacaccatcgattacagcgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACt                                                                                                       >  2:548375‑M2/130‑139 (MQ=255)            caccatcgattacagcgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGcc                                                                                                   >  1:1007800‑M2/126‑139 (MQ=255)                atcgattacagcgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATa                                                                                               <  2:986443‑M2/18‑1 (MQ=255)                  cgattacagcgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATaaa                                                                                             >  2:1168960‑M2/120‑139 (MQ=255)                           cgtcggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGaa                                                                                    >  2:843083‑M2/111‑139 (MQ=255)                               ggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGca                                                                                >  1:1175430‑M2/107‑139 (MQ=255)                               ggctttactgatatggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGca                                                                                <  2:103253‑M2/33‑1 (MQ=255)                                           atggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCaa                                                                          <  1:708269‑M2/39‑1 (MQ=255)                                           atggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCaa                                                                          >  2:708269‑M2/95‑133 (MQ=255)                                           atggcgcgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCt                                                                    <  1:1168960‑M2/45‑1 (MQ=255)                                                 cgtctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGcc                                                              >  1:1106080‑M2/89‑139 (MQ=255)                                                   tctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGt                                                            >  2:79345‑M2/87‑139 (MQ=255)                                                   tctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGt                                                            >  1:411899‑M2/87‑139 (MQ=255)                                                    ctgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTa                                                           <  2:418355‑M2/54‑1 (MQ=255)                                                     tgggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTAt                                                          <  1:682384‑M2/55‑1 (MQ=255)                                                       ggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGca                                                                                <  2:591115‑M2/33‑1 (MQ=255)                                                       ggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGca                                                                                >  1:591115‑M2/83‑115 (MQ=255)                                                       ggcgaccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCa                                                        >  1:1162893‑M2/83‑139 (MQ=255)                                                            ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCAcc                                                                                        >  2:967113‑M2/78‑102 (MQ=255)                                                            ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCAcc                                                                                        <  1:967113‑M2/25‑1 (MQ=255)                                                            ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCAcc                                                                                        <  1:1196176‑M2/25‑1 (MQ=255)                                                            ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCAcc                                                                                        >  2:1196176‑M2/78‑102 (MQ=255)                                                            ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa                                                   <  2:1101605‑M2/62‑1 (MQ=255)                                                            ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa                                                   <  1:1058207‑M2/62‑1 (MQ=255)                                                            ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa                                                   <  2:1162893‑M2/62‑1 (MQ=255)                                                            ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa                                                   <  2:277337‑M2/62‑1 (MQ=255)                                                            ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa                                                   <  2:411899‑M2/62‑1 (MQ=255)                                                            ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa                                                   <  1:536507‑M2/62‑1 (MQ=255)                                                            ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa                                                   <  1:265579‑M2/62‑1 (MQ=255)                                                            ccaggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa                                                   <  2:688759‑M2/62‑1 (MQ=255)                                                             caggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAAt                                                  <  2:1007800‑M2/63‑1 (MQ=255)                                                              aggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATa                                                 <  2:675612‑M2/64‑1 (MQ=255)                                                               ggtagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa                                                <  1:102326‑M2/65‑1 (MQ=255)                                                                 tagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg                                              <  2:823284‑M2/67‑1 (MQ=255)                                                                 tagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg                                              <  1:548375‑M2/67‑1 (MQ=255)                                                                 tagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg                                              <  1:79345‑M2/67‑1 (MQ=255)                                                                 tagacggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCACCGTATCAGCGAATAACg                                              <  1:324547‑M2/67‑1 (MQ=255)                                                                    acggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGta                                           <  1:843083‑M2/70‑1 (MQ=255)                                                                      ggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg                                              >  2:970356‑M2/68‑134 (MQ=255)                                                                      ggtcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACg                                              <  1:970356‑M2/67‑1 (MQ=255)                                                                        tcagcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATAct                                       >  1:76510‑M2/66‑139 (MQ=255)                                                                          agcgtccgctggcggttatccacgcgaaagacgaaaacagctggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa                                                   <  2:250857‑M2/62‑1 (MQ=255)                                                                          agcgtccgctggcggttatccacgcgaaagacgaaaacagctggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa                                                   >  1:250857‑M2/64‑125 (MQ=255)                                                                          agcgtccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACAAACTGTCTATCGCCGTATCAGCGAATAACGGTATActga                                     >  2:1203812‑M2/64‑139 (MQ=255)                                                                          agcgtccgctggcggttaaccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATActga                                     >  1:676083‑M2/64‑139 (MQ=255)                                                                              tccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa                                                <  2:1158702‑M2/65‑1 (MQ=255)                                                                              tccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa                                                >  1:1158702‑M2/60‑124 (MQ=255)                                                                              tccgctggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATActgatctg                                 <  2:971887‑M2/80‑1 (MQ=255)                                                                                    ggcggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCAtt                           >  2:930483‑M2/54‑139 (MQ=255)                                                                                      cggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa                                                   >  2:1149516‑M2/52‑113 (MQ=255)                                                                                      cggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGaa                                                   <  1:1149516‑M2/62‑1 (MQ=255)                                                                                      cggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa                                                >  2:63492‑M2/52‑116 (MQ=255)                                                                                      cggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATaa                                                <  1:63492‑M2/65‑1 (MQ=255)                                                                                       ggttatccacgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTaa                        <  2:598603‑M2/89‑1 (MQ=255)                                                                                               acgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAg                >  1:655788‑M2/43‑139 (MQ=255)                                                                                                cgcgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGc               <  1:1203812‑M2/98‑1 (MQ=255)                                                                                                  cgaaagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCAc             <  2:76510‑M2/100‑1 (MQ=255)                                                                                                     aagacgaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGa          <  2:939883‑M2/103‑1 (MQ=255)                                                                                                          gaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACg     <  1:227522‑M2/108‑1 (MQ=255)                                                                                                          gaaaacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACg     <  1:930483‑M2/108‑1 (MQ=255)                                                                                                             aacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGgag  <  2:676083‑M2/111‑1 (MQ=255)                                                                                                             aacaactggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCATATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGTGTACGgag  >  1:739622‑M2/29‑139 (MQ=255)                                                                                                                  ctggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGc               <  1:1124913‑M2/98‑1 (MQ=255)                                                                                                                  ctggcaggaagcggcgaaagcggCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGc               >  2:1124913‑M2/24‑121 (MQ=255)                                                                                                                                         |                                                                                                               GACACCATCGATTACAGCGTCGGCTTTACTGATATGGCGCGTCTGGGCGACCAGGTAGACGGTCAGCGTCCGCTGGCGGTTATCCACGCGAAAGACGAAAACAACTGGCAGGAAGCGGCGAAAGCGGTGAAAGCGGCAATTAAACTTGCCGATAAAGCACCGGAAAGCACACCAACTGTCTATCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAG  >  NC_000913/4619351‑4619597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑