Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,757,753 Δ5 bp coding (969‑973/1005 nt) ldtE ← murein L,D‑transpeptidase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1757753 1757757 5 51 [0] [0] 49 ldtE murein L,D‑transpeptidase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 17577520 (0.000)49 (0.830) 32/208 0.6 100% coding (974/1005 nt) ldtE murein L,D‑transpeptidase
?NC_000913 1757758 = 0 (0.000)coding (968/1005 nt) ldtE murein L,D‑transpeptidase

CCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCTCTGGTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATT  >  NC_000913/1757618‑1757888
                                                                                                                                      |                                                                                                                                        
ccAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcac                                                                                                                                      >  2:495999‑M1/1‑135 (MQ=255)
    cGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccatt                                                                                                                                  >  1:337768‑M1/1‑131 (MQ=255)
           acaacaTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgct                                                                                                                           <  1:495999‑M1/139‑16 (MQ=255)
                                           tACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcggg                                                                                           <  2:1158931‑M1/139‑48 (MQ=255)
                                               tgtgAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagtt                                                                                       >  1:358260‑M1/1‑88 (MQ=255)
                                               tgtgAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccatt                                                                                                                                  <  2:210352‑M1/96‑9 (MQ=255)
                                               tgtgAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccatt                                                                                                                                  >  1:210352‑M1/1‑88 (MQ=255)
                                                                cgcACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgct                                                                                                                           >  2:285085‑M1/1‑71 (MQ=255)
                                                                cgcACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgct                                                                                                                           <  1:285085‑M1/86‑16 (MQ=255)
                                                                 gcACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaa                                                                     <  2:358260‑M1/139‑70 (MQ=255)
                                                                  cacaTTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactc                                                                                                                      <  2:411345‑M1/89‑21 (MQ=255)
                                                                  cacaTTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactc                                                                                                                      >  1:411345‑M1/1‑69 (MQ=255)
                                                                         tgCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggata                                                             <  2:337768‑M1/139‑78 (MQ=255)
                                                                         tgCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcac                                                                         >  1:1094056‑M1/1‑62 (MQ=255)
                                                                         tgCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcac                                                                         <  2:1094056‑M1/127‑66 (MQ=255)
                                                                           cgcCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCT                                                                                                                                          >  1:1257654‑M1/1‑60 (MQ=255)
                                                                           cgcCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCT                                                                                                                                          <  2:1257654‑M1/60‑1 (MQ=255)
                                                                            gcCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccc                                                          >  2:1253169‑M1/1‑59 (MQ=255)
                                                                              cATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctg                                                        >  2:1198516‑M1/1‑57 (MQ=255)
                                                                              cATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctg                                                        <  1:1253169‑M1/139‑83 (MQ=255)
                                                                              cATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctg                                                        >  2:1200587‑M1/1‑57 (MQ=255)
                                                                               aTTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgc                                                       >  2:257147‑M1/1‑56 (MQ=255)
                                                                               aTTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgc                                                       >  1:566729‑M1/1‑56 (MQ=255)
                                                                                ttttttttGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcc                                                      <  1:257147‑M1/139‑85 (MQ=255)
                                                                                                       ttaCTGCGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacgctttatcgac                               >  2:1243459‑M1/2‑32 (MQ=255)
                                                                                                             cGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacg                                         >  1:681724‑M1/1‑26 (MQ=255)
                                                                                                             cGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacg                                         <  2:681724‑M1/123‑98 (MQ=255)
                                                                                                             cGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaa                                           <  1:1016034‑M1/121‑96 (MQ=255)
                                                                                                             cGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaa                                           >  2:1016034‑M1/1‑26 (MQ=255)
                                                                                                             cGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcggg                                                                                           >  1:1232106‑M1/1‑26 (MQ=255)
                                                                                                             cGTCACGCGTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcggg                                                                                           <  2:1232106‑M1/73‑48 (MQ=255)
                                                                                                               tCACGCGTAACATATTCCCTTGCTtcaccattctgcgct                                                                                                                           >  2:1292664‑M1/1‑24 (MQ=255)
                                                                                                               tCACGCGTAACATATTCCCTTGCTtcaccattctgcgct                                                                                                                           <  1:1292664‑M1/39‑16 (MQ=255)
                                                                                                                  cgcgTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattg                                                                                                      <  1:228298‑M1/57‑37 (MQ=255)
                                                                                                                  cgcgTAACATATTCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattg                                                                                                      >  2:228298‑M1/1‑21 (MQ=255)
                                                                                                                             ttCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacgctttatcgactaacttctgatctacagcctta         >  2:1175644‑M1/1‑10 (MQ=255)
                                                                                                                             ttCCCTTGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacgctttatcgactaacttctgatctacagcctta         <  2:566729‑M1/139‑130 (MQ=255)
                                                                                                                                   tGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacgctttatcgactaacttctgatctacagccttattgtct   >  1:1397743‑M1/1‑4 (MQ=255)
                                                                                                                                   tGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacgctttatcgactaacttc                        <  1:506063‑M1/118‑115 (MQ=255)
                                                                                                                                   tGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacgctttatcgactaacttc                        >  2:506063‑M1/1‑4 (MQ=255)
                                                                                                                                   tGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacga                                                <  1:271460‑M1/94‑91 (MQ=255)
                                                                                                                                   tGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacga                                                >  2:271460‑M1/1‑4 (MQ=255)
                                                                                                                                   tGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcggg                                                                                           >  2:186152‑M1/1‑4 (MQ=255)
                                                                                                                                   tGCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcggg                                                                                           <  1:186152‑M1/51‑48 (MQ=255)
                                                                                                                                    tcttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacgctttat                                   >  2:891801‑M1/2‑3 (MQ=255)
                                                                                                                                    gCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacgctttatcgactaacttctgatctacagccttattgtctt  >  1:63478‑M1/1‑3 (MQ=255)
                                                                                                                                    gCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacgctttatcgact                              <  2:1202057‑M1/111‑109 (MQ=255)
                                                                                                                                    gCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacgctttatcgact                              >  1:1202057‑M1/1‑3 (MQ=255)
                                                                                                                                    gCTtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatacaacgctttat                                   <  1:891801‑M1/106‑104 (MQ=255)
                                                                                                                                    gCTtcaccattctgcgctgactctactgaaggcgcattg                                                                                                      >  2:279432‑M1/1‑3 (MQ=255)
                                                                                                                                    gCTtcaccattctgcgctgactctactgaaggcgcattg                                                                                                      <  1:279432‑M1/39‑37 (MQ=255)
                                                                                                                                      |                                                                                                                                        
CCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCTTGCTCTGGTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATCGACTAACTTCTGATCTACAGCCTTATT  >  NC_000913/1757618‑1757888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: