| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 883,665 | IS1 (–) +9 bp | [mdfA] | [mdfA] | |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 19796 = | NA (NA) | 40 (0.750) | 34/208 | 0.4 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 883673 | 0 (0.000) | coding (1/1233 nt) | mdfA | multidrug efflux system protein | |||||
| * | ? | NC_000913 | = 279930 | NA (NA) | 45 (0.860) | 33/204 | 0.4 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 883665 = | 0 (0.000) | intergenic (‑277/‑8) | ybjG/mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein | |||||
CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/19933‑19796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACGCTTTCTTTAAGTT < NC_000913/883673‑883539 CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCT > 2:1048791/1‑139 GAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTC < 2:191684/139‑1 ATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTT > 1:1090365/1‑139 CTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCG < 1:958076/139‑1 GCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCG < 2:831907/139‑1 CACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGC < 1:1052010/139‑1 ACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCA < 2:1127758/139‑1 GACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAA > 2:378933/1‑139 GACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAA < 2:1126413/139‑1 CTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAG < 1:1048791/139‑1 TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCG > 2:801868/1‑84 TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCG < 1:801868/84‑1 TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCT < 2:729230/81‑1 TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCT > 1:729230/1‑81 TGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAA > 1:1204896/1‑139 TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGT > 1:179554/1‑139 TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAAC < 1:1272797/133‑1 TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAAC > 2:1272797/1‑133 CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAG < 1:1125637/139‑1 TTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAATGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATT > 1:718601/1‑139 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTT < 1:1313643/139‑1 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACA < 1:378933/139‑1 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACA > 1:319188/1‑139 ACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATT < 2:1090365/139‑1 TAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATT > 1:394384/1‑139 TAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATT < 2:179554/139‑1 TAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATT < 2:319188/139‑1 CACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAG < 2:945446/139‑1 TATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTAC < 2:132432/133‑1 TATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTAC > 1:132432/1‑133 ATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCA > 2:283103/1‑105 ATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCA < 1:283103/105‑1 AAGTTGGAGTCATTACCTGCAATTTCTTCGCTAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCA < 2:843915/109‑1 AAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATAGCGCAGAGTATAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCA > 1:843915/1‑109 AGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCG < 2:9602/38‑1 AGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCG > 1:9602/1‑38 TTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACGCTTTCTTTAAGT < 2:718601/139‑1 TTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACGCTTTCTTT < 1:1119623/135‑1 TTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACGCTTTCTTT > 2:1119623/1‑135 TACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACGCTTTCTTTAAGTT > 2:501637/1‑139 CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/19933‑19796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACGCTTTCTTTAAGTT < NC_000913/883673‑883539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |