| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,293,006 | IS5 (+) +4 bp | intergenic (‑84/‑518) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1293006 = | 0 (0.000) | 21 (0.390) | 18/208 | 1.6 | 100% | intergenic (‑84/‑521) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1300693 | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1293009 | 0 (0.000) | 57 (1.070) | 43/206 | 0.2 | 100% | intergenic (‑87/‑518) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | 1299499 = | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
CCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGT > NC_000913/1292871‑1293144 | aacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAg > 2:289429‑M1/136‑139 (MQ=255) tGCGCACGAAGAGTACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGgg > 1:1264330‑M1/1‑137 (MQ=255) cgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGa < 1:1279025‑M1/6‑1 (MQ=255) cgcACGAAGAGTACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaa > 2:901626‑M1/1‑135 (MQ=255) cgcACGAAGAGTACGGATGTTGTTCAGAATTTTAAATGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaa > 1:1035694‑M1/1‑135 (MQ=255) gcACGAAGAGTACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaag < 2:602691‑M1/139‑6 (MQ=255) cttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGAAtt < 2:1280988‑M1/9‑1 (MQ=255) gTACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaaca < 1:901626‑M1/139‑15 (MQ=255) gATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtcc > 1:1367457‑M1/1‑120 (MQ=255) ttgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctga > 2:426940‑M1/1‑116 (MQ=255) ttgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctga > 1:1299078‑M1/1‑116 (MQ=255) ataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTgccg > 1:1280988‑M1/106‑139 (MQ=255) taggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTgccgc > 2:1279025‑M1/105‑139 (MQ=255) taggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTgccgc > 2:350293‑M1/105‑139 (MQ=255) aaTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGgg < 2:1023109‑M1/110‑3 (MQ=255) aaTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGgg > 1:1023109‑M1/1‑108 (MQ=255) gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCaa < 1:1230581‑M1/38‑1 (MQ=255) gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCaa < 2:614629‑M1/38‑1 (MQ=255) ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCaat < 1:1152862‑M1/39‑1 (MQ=255) tCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc < 2:1367457‑M1/139‑45 (MQ=255) tGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca < 2:1299078‑M1/139‑53 (MQ=255) aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGc < 1:391271‑M1/62‑1 (MQ=255) aTCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca < 2:1264330‑M1/139‑60 (MQ=255) aTCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca < 2:373816‑M1/139‑60 (MQ=255) tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaa < 2:563866‑M1/89‑13 (MQ=255) tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaa > 1:563866‑M1/1‑77 (MQ=255) tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAcg > 2:1152862‑M1/67‑139 (MQ=255) aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAcgcg > 1:614629‑M1/65‑139 (MQ=255) ggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccc > 2:344862‑M1/1‑59 (MQ=255) ggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccc < 1:344862‑M1/79‑21 (MQ=255) gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGTATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGc > 2:1241329‑M1/56‑139 (MQ=255) gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGc > 2:1278281‑M1/56‑139 (MQ=255) gtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac > 2:1051875‑M1/1‑58 (MQ=255) gtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgaga < 1:8043‑M1/88‑31 (MQ=255) gtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgaga > 2:8043‑M1/1‑58 (MQ=255) ttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg > 1:543539‑M1/1‑53 (MQ=255) ttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg < 2:543539‑M1/100‑48 (MQ=255) actgagtcagccgagaagaatttccccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac < 1:1186297‑M1/95‑1 (MQ=255) gtcagccgagaagaatttccccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatg < 2:60828‑M1/100‑1 (MQ=255) aataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca < 1:1051875‑M1/139‑97 (MQ=255) aataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag > 2:996748‑M1/1‑43 (MQ=255) aataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag < 1:996748‑M1/92‑50 (MQ=255) gagCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtga > 2:1257526‑M1/1‑39 (MQ=255) agCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga < 1:248309‑M1/110‑73 (MQ=255) agCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga > 2:248309‑M1/1‑38 (MQ=255) agCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtcc > 1:1125831‑M1/1‑38 (MQ=255) agCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtcc < 2:1125831‑M1/57‑20 (MQ=255) gCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaat > 1:1223151‑M1/1‑37 (MQ=255) gCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaat > 2:1277892‑M1/1‑37 (MQ=255) ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt > 2:620032‑M1/1‑36 (MQ=255) ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataaaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt > 2:954691‑M1/1‑36 (MQ=255) cTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc < 2:483268‑M1/126‑92 (MQ=255) cTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc > 1:483268‑M1/1‑35 (MQ=255) tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataaaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag < 1:954691‑M1/139‑107 (MQ=255) tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgat < 1:888535‑M1/57‑25 (MQ=255) tAAATTCACTTGTGCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgat > 2:888535‑M1/1‑33 (MQ=255) aatttccccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACg < 2:609069‑M1/113‑1 (MQ=255) tttccccgcttattcgcaccttccTAAGGAATTCAAAAtt < 1:135592‑M1/16‑1 (MQ=255) tttccccgcttattcgcaccttccTAAGGAATTCAAAAtt > 2:135592‑M1/25‑40 (MQ=255) ccgcttattcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGtt < 2:1054663‑M1/120‑1 (MQ=255) tgCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccg > 1:1346609‑M1/1‑21 (MQ=255) tgCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtcc > 1:374506‑M1/1‑21 (MQ=255) tgCAATAGCCAGGAATGTAAGggaaggtgcgaacaagtcc < 2:374506‑M1/40‑20 (MQ=255) cAATAGCCAGGAATGTAAGggaaggtgcgaacaagtcc > 2:1264508‑M1/1‑19 (MQ=255) cAATAGCCAGGAATGTAAGggaaggtgcgaacaagtcc < 1:1264508‑M1/38‑20 (MQ=255) attcgcaccttccTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACt < 1:1153025‑M1/126‑1 (MQ=255) tAGCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgctgacagtgaattcagcagtaagcgccgtcaga > 1:884123‑M1/1‑16 (MQ=255) gCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgctgacagtgaattcagcagtaagcgccgtcagacc < 2:884123‑M1/139‑126 (MQ=255) gCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacc < 1:426940‑M1/139‑126 (MQ=255) gCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacc > 2:1311286‑M1/1‑14 (MQ=255) gCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg < 1:367025‑M1/76‑63 (MQ=255) gCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg > 2:367025‑M1/1‑14 (MQ=255) gCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgag > 2:607523‑M1/1‑14 (MQ=255) gCCAGGAATGTAAGggaaggtgcgaacaagtccctgatatgag < 1:607523‑M1/43‑30 (MQ=255) aGGAATGTAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccaga > 1:767350‑M1/1‑11 (MQ=255) tAAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga > 2:1025641‑M1/1‑4 (MQ=255) | CCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGT > NC_000913/1292871‑1293144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |