New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 1799309	93 (0.480)	5 (0.030)	5/410	NT	6.8%	coding (350/2388 nt)	pheT	phenylalanine‑‑tRNA ligase subunit beta
	?	NC_007779	= 1799488	48 (0.260)					coding (171/2388 nt)	pheT	phenylalanine‑‑tRNA ligase subunit beta

GGTCGCACCAACCGGAACGATTTCCGGTTGAACCAGCGGCAGCTGGTTCAGCACGGCAACGTCACGCGCAACACCAATGATGCCTAAGCAGTCGGCACGGTTTGGCGTCACGCTGATTTCGATGGTGTTGTCATCAAGTTTCAGGTATTCACGGATATCGGTGCCAATCGGCGCATCCGCAGGCAGTTCGATAATGCCGCTGTGATCGTCAGAAATGCCCAGTTCAGAGAAGGAGCACAGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/1799065‑1799309 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcatccGAACGCTGACAAACTGCGTGTGACAAAAGTGAATGTCGGCGGCGATCGCCTGCTGGACATCGTCTGCGGTGCGCCAAACTGCCGTCAGGGCCTGCGTGTAGCGGTAGCGACCATTGGTGCTGTTCTGCCGGGTGATTTCAAAATTAAAGCGGCGAAACTGCGTGGCGAACCGTCTGAAGGGATGCTGTGCTCCTTCTCTGAACTGGGCATTTCTGACGATCACAGCGGCATTATCGAA  <  NC_007779/1799488‑1799251                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGTCGCACCAACCGGAACGATTTCCGGTTGAACCAGCGGCAGCTGGTTCAGCACGGCAACGTCACGCGCAACACCAATGATGCCTAAGCAGTCGGCACGGTTTGGCGTCACGCTGATTTCGATGGTGTTGTCATCAAGTTTCAGGTATTCACGGATATCGGTGCCAATCGGCGCATCCGCAGGCAGTTCGATAATGCCGCTGTGATCGTCAGAAATGCCCAGTTCAGAGAAGGAGCACA                                                                                                                                                                                                                                                      >  2:1594909/1‑239   TCGCACCAACCGGAACGATTTCCGGTTGAACCAGCGGCAGCTGGTTCAGCACGGCAACGTCACGCGCAACACCAATGATGCCTAAGCAGTCGGCACGGTTTGGCGTCACGCTGATTTCGATGGTGTTGTCATCAAGTTTCAGGTATTCACGGATATCGGTGCCAATCGGCGCATCCGCAGGCAGTTCGATAATGCCGCTGTGATCGTCAGAAATGCCCAGTTCAGAGAAGGAGCACAG                                                                                                                                                                                                                                                     <  1:1911361/238‑1                                      GGCAGCTGGTTCAGCACGGCAACGTCACGCGCAACACCAATGATGCCTAAGCAGTCGGCACGGTTTGGCGTCACGCTGATTTCGATGGTGTTGTCATCAAGTTTCAGGTATTCACGGATATCGGTGCCAATCGGCGCATCCGCAGGCAGTTCGATAATGCCGCTGTGATCGTCAGAAATGCCCAGTTCAGAGAAGGAGCACAGCATCCGAACGCTGACAAACTGCGTGTGACAAAAGTG                                                                                                                                                                                                                 >  1:1458439/1‑239                                                                 CGCGCAAACCAAATGATGCCGAAGCAGTCGGCACGCTTTGGCGTCACGCTGATTGCGATGGTTTTGTCATCAAGTTTCAGGTATTCACGGATATCGGTGACAATCGGCGCATCCGCAGGCAGTTCGATAATGCCGCTGTGATCGTCAGAAATGCCCAGTTCAGAGAAGGAGCACAGCATCCGAACGCTGACAAACTGCGTGTGACAAAAGTGAAGGTCGGCGGCGATCGCCTGCTGGAC                                                                                                                                                                                      <  2:1275406/239‑1                                                                                     TAAGCAGTCGGCACGGTTTGGCGTCACGCTGATTTCGATGGTGTTGTCATCAAGTTTCAGGTATTCACGGATATCGGTGCCAATCGGCGCATCCGCAGGCAGTTCGATAATGCCGCTGTGATCGTCAGAAATGCCCAGTTCAGAGAAGGAGCACAGCATCCGAACGCTGACAAACTGCGTGTGACAAAAGTGAATGTCGGCGGCGATCGCCTGCTGGACATCGTCTGCGGTGCGCCAA                                                                                                                                                                   >  1:432009/1‑238                                                                                                  CGGTTTGGCGTCACGCTGATTTCGATGGTGTTGTCATCAAGTTTCAGGTATTCACGGATATCGGTGCCAATCGGCGCATCCGCAGGCAGTTCGATAATGCCGCTGTGATCGTCAGAAATGCCCAGTTCAGAGAAGGAGCACAGCATCCGAACGCTGACAAACTGCGTGTGACAAAAGTGAATGTCGGCGGCGATCGCCTGCTGGACATCGTCTGCGGTGCGCCAAACTGCCGTCAGGGC                                                                                                                                                     <  2:432009/239‑1                                                                                                                                                                                TCCGCAGGCAGTTCGATAATGCCGCTGTGATCGTCAGAAATGCCCAGTTCAGAGAAGGAGCACAGCATCCGAACGCTGACAAACTGCGTGTGACAAAAGTGAATGTCGGCGGCGATCGCCTGCTGGACATCGTCTGCGGTGCGCCAAACTGCCGTCAGGGCCTGCGTGTAGCGGTAGCGACCATTGGTGCTGTTCTGCCGGGTGATTTCAAAATTAAAGCGGCGAAACTGCGTGGCGAA                                                                       <  2:1458439/239‑1                                                                                                                                                                                                                                                  ATCCGAACGCTGACAAACTGCGAGTGACAAAAGTGAATGTCGGCGGCGATCGCCTGCTGGACATCGTCTGCGGTGCGCCAAACTGCCGTCAGGGCCTGCGTGTAGCGGTAGCGACCATTGGTGCTGTTCTGCCGGGTGATTTCAAAATTAAAGCGGCGAAACTGCGTGGCGAACCGTCTGAAGGTATGCTGTGCTCCTTCTCTGAACGGGGCATTGCTGACGATCACACCGGCATCATC     >  2:1752848/1‑239                                                                                                                                                                                                                                                     CGACCGCTGACAAACTGCGTGTGACAAAAGTGAATGTCGGCGGCGATCGCCTGCTGGACATCGTCTGCGGTGCGCCAAACTGCCGTCAGGGCCTGCGTGTAGCGGTAGCGACCATTGGTGCTGTTCTGCCGGGTGATTTCAAAATTAAAGCGGCGAAACTGCGTGGCGAACCGTCTGAAGGGATGCTGTGCTCCTTCTCTGAACTGGGCATTTCTGACGATCACAGCGGCATTATCGAA  <  1:1458915/239‑1                                                                                                                                                                                                                                                     CGAACGCTGACAAGCTGCGTGTGACAAAAGTGAATGTCGGCGGCGATCGCCTGCTGGACATCGTCTGCGGTGCGCCAAACTGCCGTCAGGGCCTGCGTGTAGCTGTAGCGACCATTGGTGCTGTTCTGCCGGGTGATTTCAAAATTAAAGCGGCGAAACTGCGTGGCGAGCCGTCTGAATGGATGCTGTGCTCCTTCTCTGAACTGGGCATTTCTGACGATCACAGCGGCATTATCGAA  <  1:1115922/239‑1                                                                                                                                                                                                                                                     CGAACGCTGACAAACTGCGTGTGACAAAAGTGAATGTCGGCGGCGATCGCCTGCTGGACATCGTCTGCGGTGCGCCAAACTGCCGTCAGGGCCTGCGTGTAGCGGTAGCGACCATTGGTGCTGTTCTGCCGGGTGATTTCAAAATTAAAGCGGCGAAACTGCGTGGCGAACCGTCTGAAGGGATGCTGTGCTCCTTCTCTGAACTGGGCATTTCTGACGATCACAGCGGCATTATCGAA  <  1:1075901/239‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGTCGCACCAACCGGAACGATTTCCGGTTGAACCAGCGGCAGCTGGTTCAGCACGGCAACGTCACGCGCAACACCAATGATGCCTAAGCAGTCGGCACGGTTTGGCGTCACGCTGATTTCGATGGTGTTGTCATCAAGTTTCAGGTATTCACGGATATCGGTGCCAATCGGCGCATCCGCAGGCAGTTCGATAATGCCGCTGTGATCGTCAGAAATGCCCAGTTCAGAGAAGGAGCACAGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/1799065‑1799309 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcatccGAACGCTGACAAACTGCGTGTGACAAAAGTGAATGTCGGCGGCGATCGCCTGCTGGACATCGTCTGCGGTGCGCCAAACTGCCGTCAGGGCCTGCGTGTAGCGGTAGCGACCATTGGTGCTGTTCTGCCGGGTGATTTCAAAATTAAAGCGGCGAAACTGCGTGGCGAACCGTCTGAAGGGATGCTGTGCTCCTTCTCTGAACTGGGCATTTCTGACGATCACAGCGGCATTATCGAA  <  NC_007779/1799488‑1799251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.