New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 4001888	175 (1.040)	3 (0.020)	3/418	NT	1.8%	coding (886/1500 nt)	pitA	inorganic phosphate transporter PitA
	?	NC_007779	= 4002033	155 (0.960)					coding (741/1500 nt)	pitA	inorganic phosphate transporter PitA
Rejected: Frequency below/above cutoff threshold.

CTAAGCATGTCGGACTTCAGTTTCTTCAACAGGCGCTGATCGTCAGCACTCACGCCAGGCATCTTCACCACTTTGTCGATAGTGTCAGAAACGCACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACATACCTTTCAGGCGGTTGAGCGCGTTAATGGTATTCGACGGATGGCAGTGGAACTCCGCAGGTTGCGTTGCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/4001644‑4001888 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccagcAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGAT  <  NC_007779/4002033‑4001799                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTAAGCATGTCGGACTTCAGTTTCTTCAACAGGCGCTGATCGTCAGCACTCACGCCAGGCATCTTCACCACTTTGTCGATAGTGTCAGAAACGCACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACATACCTTTCAGGCGGTTGAGCGCGTTAATGGTATTCGACGGATGGCCGTGGAACTCCGCAGGTTGCGTTGC                                                                                                                                                                                                                                                   >  1:1328732/1‑239  TAAGCATGTCGGACTTCAGTTTCTTCAACAGGCGCTGATCGTCAGCACTCACGCCAGGCATCTTCACCACTTTGTCGATAGTGTCAGAAACGCACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACATACCTTTCAGGCGGTTGAGCGCGTTAATGGTATTCGACGGATGGCAGTGGAACTCCGCAGGTTGCGTTGC                                                                                                                                                                                                                                                   >  1:791666/1‑238  TAAGCATGTCGGACTTCAGTTTCTTCAACAGGCGCTGATCGTCAGCACTCACGCCAGGCATCTTCACCACTTTGTCGATAGTGTCAGAAACGCACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACATACCTTTCAGGCGGTTGAGCGCGTTAATGGTATTCGACGGATGGCAGTGGAACCCCGCAGGTCGCGTTGC                                                                                                                                                                                                                                                   >  2:761151/1‑238  TAAGCATGTCGGACTTCAGTTTCTTCAACAGGCGCTGATCGTCAGCACTCACGCCAGGCATCTTCACCACTTTGTCGATAGTGTCAGAAACGCACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACATACCTTTCAGGCGGTTGAGCGCGTTAATGGTATTCAACGGATGGCAGTGGAACTCCGCAGGTTGCGTTGCG                                                                                                                                                                                                                                                  <  2:364958/239‑1    AGCATGTCGTACTTCAGTTTCTTCAACAGGCGCTGATCGTCAGCACTCACGCCAGGCATCTTCACCACGTTGTCGAGAGTGTCAGAAACGCACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCTACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACATGCCTTTCAGGCGGTTGAGCGCGTTAATGGTATTCGACGGATGGCAGTGGAACTCCGCAGGTTGCGTTGCGCC                                                                                                                                                                                                                                                <  2:1734448/239‑1    AGCATGTCGGACTTCAGTTTCTTCAACAGGCGCTGATCGTCAGCACTCACGCCAGGCATCTTCACCACTTTGTCGATAGTGTCAGAAACGCACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACATACCTTTCAGGCGGTTGAGCGCGTTAATGGTATTCGACGGATGGCAGTGGAACTCCGCAGGTTGCGTTGCGCC                                                                                                                                                                                                                                                >  1:1463855/1‑239    AGCATGTCGGACTTCAGTTTCTTCAACAGGCGCTGATCGTCAGCACTCACGCCAGGCATCTTCACCACTTTGTCGATAGTGTCAGAAACGCACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACATACCTTTCAGGCGGTTGAGCGCGTTAATGGTATTCGACGGATGGCAGTGGAACTCCGCAGGTTGCGTTGCGCC                                                                                                                                                                                                                                                >  1:213010/1‑239       ATGTCGGACTTCAGTTTCTTCAACAGGCGCTGATCGTCAGCACTCACGCCAGGCATCTTCACCACTTTGTCGATAGTGTCAGAAACGCACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACATACCTTTCAGGCGGTTGAGCGCGTTAATGGTATTCGACGGATGGCAGTGGAACTCCGCAGGTTGCGTTGCGCCA                                                                                                                                                                                                                                               <  1:1911523/237‑1         GTCGGACTTCAGTTTCTTCAACAGGCGCTGATCGTCAGCACTCACGCCAGGCATCTTCACCACTTTGTCGATAGTGTCAGAAACGCACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACATACCTTTCAGGCGGTTGAGCGCGTTAATGGTATTCCACGGCTGGCAGTGGAACTCCGAAGGTTGCGTTTCGCCCGCg                                                                                                                                                                                                                                            >  2:1936434/1‑237         GTCGGACTTCAGTTTCTTCAACAGGCGCTGATCGTCAGCACTCACGCCAGGCATCTTCACCACTTTGTCGAGAGCGTCAGAAACGCACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTCCCACATCGGTGGTCAACATACCTTTCAGGCGGTTGAACGCGTTAACGGTATTCGACGGAGCGCAGTGAAACTCCGCAGGGTGCGTTGCGCCAGat                                                                                                                                                                                                                                            >  2:1793183/1‑236                                                                                               cCAGCATAATGCTGCGCATCTGGCTACGGTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACATACCTTTCAGGCGGTTGAGCGCGTTAATGGTATTCGACGGATGGCAGTGGAACTCCGCAGGTTGCGTTGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCA                                                                                                                                                      <  2:400215/237‑1                                                                                                                                                                                                                GGATGGCAGTGGAACTCCGCAGGTTGCGTTGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTC                                                                                                                                                                       <  2:961834/108‑1                                                                                                                                                                                                                GGATGGCAGTGGAACTCCGCAGGTTGCGTTGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTC                                                                                                                                                                       >  1:961834/1‑108                                                                                                                                                                                                                                              ggGCCCGCAGGTTTCGTGGTGAACATGAATGCCACTGGCTACTATATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCCACGCAACCTGCGGAGTTCCACTGCCCTCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCAC      <  2:995180/237‑1                                                                                                                                                                                                                                              GCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGG                                                                                                                        <  2:164019/125‑1                                                                                                                                                                                                                                              GCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGG                                                                                                                        >  1:164019/1‑125                                                                                                                                                                                                                                               CGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACC     >  1:798078/1‑239                                                                                                                                                                                                                                               CGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACC     >  1:1848694/1‑239                                                                                                                                                                                                                                               CGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACC     >  1:1233195/1‑239                                                                                                                                                                                                                                                GCCAGCAGGCTTCGTGGTAAACATGAATGCCGCTGGCTACTAAATCACCCGTACCCGTGATGCCTTCAAAAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCG    <  2:41784/239‑1                                                                                                                                                                                                                                                  CAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGAT  <  2:1543478/239‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTAAGCATGTCGGACTTCAGTTTCTTCAACAGGCGCTGATCGTCAGCACTCACGCCAGGCATCTTCACCACTTTGTCGATAGTGTCAGAAACGCACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACATACCTTTCAGGCGGTTGAGCGCGTTAATGGTATTCGACGGATGGCAGTGGAACTCCGCAGGTTGCGTTGCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/4001644‑4001888 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccagcAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCATCCTGCGCTGCTCAAACAGGCTACCGGTGCTGATCAGTTAGTACCGGCTCCGGAAGCTGGCGCAACGCAACCTGCGGAGTTCCACTGCCATCCGTCGAATACCATTAACGCGCTCAACCGCCTGAAAGGTATGTTGACCACCGAT  <  NC_007779/4002033‑4001799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.