New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_007779 | 4051194 = | 235 (1.250) | 17 (0.100) | 6/376 | NT | 7.9% | coding (807/846 nt) | ugpE | sn‑glycerol‑3‑phosphate ABC transporter permease UgpE |
? | NC_007779 | 4051992 = | 174 (0.990) | coding (758/1071 nt) | Y75_RS20030 | sn‑glycerol 3‑phosphate ABC transporter ATP binding protein UgpC |
AGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGCTCCAGCCCGGCAACCATGCGCAGCAGCGTCGATTTCCCGCAGCCAGACGGCCCGACCATCACGATAAATTCGCCATCCGCCACATCAAGGGTCAGCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_007779/4051441‑4051194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgaaggcacgcATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATAACCTGGCGCACGGACGCTGGGGCGAGCAGAAGCTGGTGGTGCGACTGGCGCATCAGGAGCGCCCGACG > NC_007779/4051992‑4052227 actccCGCGCGGGTCGTTGATCCAGATATCGCCGTCTGTCCCCCGCCCCAGCCCGGCACCCATGCGCAGCAGCGTCGATTTCCCGCAGCCAGACGGCCCGACCATCACGATAAATTCGCCATCCGCCACATCAAGGGTCAGCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACG < 1:1971742/234‑1 ACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGCTCCAGCCCGGCAACCATGCGCAGCAGCGTCGATTTCCCGCAGCCAGACGGCCCGACCATCACGATAAATTCGCCATCCGCCACATCAAGGGTCAGCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAG > 1:517289/1‑238 ACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGCTCCAGCCCGGCAACCATGCGCAGCAGCGTCGATTTCCCGCAGCCAGACGGCCCGACCATCACGATAAATTCGCCATCCGCCACATCAAGGGTCAGCGGTTTAATGACCTGGGTTTTACCATCCCAGCCTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAG > 2:420429/1‑238 GCGCTGGTCGTTGATCCGGATTTCGCCTTCTGTCACCCGCTCCAGCCCGCCAACCAGGCGCAGCAGCGTCGTTTCCCCGCAGCAAGACGGCCCGCCCATCTCGTTAAATTCGCCATCCGCCACATCAAGGGTCAGCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCA < 1:2190182/239‑1 CGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGCTCCAGCCCGGCAACCATGCGCAGCAGCGTCGATTTCCCGCAGCCAGACGGCCCGACCATCACGATAAATTCGCCATCCGCCACATCAAGGGTCAGCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCAC > 2:1851676/1‑239 CAGCCCGGCAACCATGCGCAGCAGCGTCGATTTCCTGCAGCCAGACGGCCCGACCATCACGATAAATTCGCCATCCGCCACATCAAGGGTCAGCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACG > 2:613229/1‑239 CAACCATGCGCAGCAGCGTCGATCTCCCGCAGCCAGGCGGCCCGACCATCCCGATAAATTCGCCCTCCGCCCCATCAAGGGTCAGCGGTTTAATGACCTGGGTTTTTCCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTAC < 1:1974314/239‑1 CTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACG > 1:138634/1‑94 CTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACG < 2:138634/94‑1 TACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACG > 2:399996/1‑86 TACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACG < 1:399996/86‑1 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGTGAATAACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATA > 1:2237076/1‑239 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGTGAATAACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATA > 2:1128098/1‑239 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGTGAATAACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATA > 2:1338688/1‑239 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGTGAATAACGAAGGCACGCATTTCGAACTGGA < 1:2191336/84‑1 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCGTGAATAACGAAGGCACGCATTTCGAACTGGA > 2:2191336/1‑84 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATAACCTG > 1:2129047/1‑239 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTAC < 1:301465/113‑1 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTAC > 2:301465/1‑113 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTAC > 2:2042994/1‑113 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTAC < 1:1335705/113‑1 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTAC > 2:1335705/1‑113 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTAC < 1:2042994/113‑1 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTA < 1:1887628/112‑1 CTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTA > 2:1887628/1‑112 CCAGGCCGCG‑‑‑‑‑CACGAAGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATAACCTGGCGCACGGACGCTGGGGCGAGCAGAAGCTGGTGGTGCGACTGG < 2:2129047/239‑1 AGGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATAACCTGGCGCACGGACGCTGGGGCGAGCAGAAGCTGGTGGTGCGACTGGCGCATCAGGAGCGCC < 2:196945/239‑1 GGCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATAACCTGGCGCACGGACGCTGGGGCGAGCAGAAGCTGGTGGTGCGACTGGCGCATCAGGAGCGCCC > 1:347368/1‑239 GCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATAACCTGGCGCACGGACGCTGGGGCGAGCAGAAGCTGGTGGTGCGACTGGCGCATCAGGAGCGCCCG > 1:1143438/1‑239 GCACGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATAACCTGGCGCACGGACGCTGGGGCGAGCAGAAGCTGGTGGTGCGACTGGCGCATCAGGAGCGCCCG > 2:750206/1‑239 CGCATTTCGAACTGGGCGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATAACCTGGCGCACGGACGCTGGGGCGAGCAGAAGCTGGTGGTGCGACTGGCGCATCAGGAGCGCCCGACG < 1:2000795/239‑1 CGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATAACCTGGCGCACGGACGCTGGGGCGAGCAGAAGCTGGTGGTGCGACTGG > 2:460198/1‑219 CGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATAACCTGGCGCACGGACGCTGGGGCGAGCAGAAGCTGGTGGTGCGACTGG < 1:460198/219‑1 CGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGA > 1:694618/1‑169 CGCATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCAATGGTGATGGACACGCTGGAGATCCTCGGCGCAGA < 2:694618/169‑1 AGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGCTCCAGCCCGGCAACCATGCGCAGCAGCGTCGATTTCCCGCAGCCAGACGGCCCGACCATCACGATAAATTCGCCATCCGCCACATCAAGGGTCAGCGGTTTAATGACCTGGGTTTTACCATCCCAGCTTTTGGTTACTGCCTGTAATTTCAGTCCTGCCATCTTATTTCTCACTATCGACCAGGCCGCG‑‑‑‑‑CACGAAGGCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_007779/4051441‑4051194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgaaggcacgcATTTCGAACTGGACGGCGGTATTGAGCTGCCGCTAAACGGTGGCTACCGTCAGTATGCCGGGCGTAAAATGACTCTCGGCATTCGCCCGGAACATATTGCGCTAAGCTCGCAGGCAGAAGGCGGCGTACCGATGGTGATGGACACGCTGGAGATCCTCGGCGCAGATAACCTGGCGCACGGACGCTGGGGCGAGCAGAAGCTGGTGGTGCGACTGGCGCATCAGGAGCGCCCGACG > NC_007779/4051992‑4052227 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |