mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 30 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 4514290 | 200 (1.220) | 3 (0.020) | 3/412 | NT | 1.4% | pseudogene (602/785 nt) | Y75_RS22345 | IS3 family transposase |
| ? | NC_007779 | = 4514479 | 216 (1.360) | intergenic (+6/‑77) | Y75_RS22345/Y75_RS25085 | IS3 family transposase/hypothetical protein | |||||
| * | ? | NC_007779 | 4443426 = | 161 (0.980) | 3 (0.020) | 3/408 | NT | 1.9% | coding (517/555 nt) | Y75_RS22005 | YtfJ family protein |
| ? | NC_007779 | 4443735 = | 163 (1.040) | coding (208/555 nt) | Y75_RS22005 | YtfJ family protein | |||||
| * | ? | NC_007779 | = 4305643 | 237 (1.450) | 4 (0.030) | 4/402 | NT | 2.0% | coding (915/2052 nt) | mdtO | multidrug efflux transporter permease subunit MdtO |
| ? | NC_007779 | = 4307201 | 173 (1.120) | coding (388/1032 nt) | mdtN | multidrug efflux transporter periplasmic adaptor subunit MdtN | |||||
| * | ? | NC_007779 | = 4218386 | 147 (0.900) | 4 (0.030) | 4/402 | NT | 2.6% | coding (517/930 nt) | metA | homoserine O‑succinyltransferase |
| ? | NC_007779 | = 4218577 | 161 (1.040) | coding (708/930 nt) | metA | homoserine O‑succinyltransferase | |||||
| * | ? | NC_007779 | = 4018201 | 83 (0.510) | 3 (0.020) | 3/410 | NT | 3.6% | coding (3023/4236 nt) | Y75_RS19860 | rhs element protein RhsB |
| ? | NC_007779 | = 4018556 | NA (NA) | coding (2668/4236 nt) | Y75_RS19860 | rhs element protein RhsB | |||||
| * | ? | NC_007779 | 3941357 = | 168 (1.030) | 3 (0.020) | 3/406 | NT | 1.9% | coding (845/1680 nt) | bcsG | cellulose biosynthesis protein BcsG |
| ? | NC_007779 | 3941449 = | 154 (0.980) | coding (753/1680 nt) | bcsG | cellulose biosynthesis protein BcsG | |||||
| * | ? | NC_007779 | 3419746 = | 159 (0.970) | 4 (0.030) | 4/396 | NT | 2.5% | pseudogene (850/1025 nt) | Y75_RS16995 | amino acid ABC transporter substrate‑binding protein |
| ? | NC_007779 | 3420075 = | 166 (1.090) | coding (87/1182 nt) | Y75_RS17000 | amino acid ABC transporter permease | |||||
| * | ? | NC_007779 | 3376017 = | 182 (1.110) | 4 (0.030) | 3/412 | NT | 2.4% | coding (1294/1368 nt) | dcuC | anaerobic C4‑dicarboxylate transporter DcuC |
| ? | NC_007779 | 3376143 = | 148 (0.930) | coding (489/498 nt) | sspB | ClpXP protease specificity‑enhancing factor | |||||
| * | ? | NC_007779 | 3036516 = | 165 (1.010) | 4 (0.030) | 3/402 | NT | 2.5% | coding (247/1734 nt) | recJ | single‑stranded‑DNA‑specific exonuclease RecJ |
| ? | NC_007779 | 3036599 = | 150 (0.970) | coding (164/1734 nt) | recJ | single‑stranded‑DNA‑specific exonuclease RecJ | |||||
| * | ? | NC_007779 | = 2939659 | 171 (1.050) | 3 (0.020) | 3/408 | NT | 1.9% | coding (241/1101 nt) | rlmM | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM |
| ? | NC_007779 | = 2940112 | 142 (0.900) | coding (176/396 nt) | Y75_RS14635 | DUF423 domain‑containing protein | |||||