mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 23.1% | 80.6 / 13.0 | 41 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 36 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 28 (0.250) | 5 (0.050) | 5/510 | 11.0 | 10.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 59 (0.550) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 225456 = | 56 (0.510) | 10 (0.090) | 5/510 | 11.0 | 16.9% | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913 | 4037237 = | 44 (0.410) | intergenic (+20/‑23) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | 225456 = | 56 (0.510) | 10 (0.090) | 5/510 | 11.0 | 20.2% | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913 | = 3427056 | 25 (0.230) | intergenic (‑23/+20) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913 | 225456 = | 56 (0.510) | 10 (0.090) | 5/510 | 11.0 | 15.1% | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913 | 225477 = | 58 (0.540) | intergenic (+20/‑23) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | 1411899 = | 111 (1.010) | 4 (0.040) | 4/476 | 11.1 | 4.7% | coding (50/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| ? | NC_000913 | = 1434958 | 63 (0.630) | pseudogene (51/51 nt) | ttcC | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4037216 = | 48 (0.430) | 10 (0.090) | 4/510 | 11.7 | 18.1% | noncoding (76/77 nt) | ileT | tRNA‑Ile |
| ? | NC_000913 | 4037237 = | 44 (0.410) | intergenic (+20/‑23) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 3427077 | 24 (0.220) | 10 (0.090) | 4/510 | 11.7 | 22.9% | noncoding (76/77 nt) | ileU | tRNA‑Ile |
| ? | NC_000913 | 4037237 = | 44 (0.410) | intergenic (+20/‑23) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 3427065 | 25 (0.230) | 10 (0.090) | 4/510 | 11.7 | 22.4% | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913 | 4037225 = | 45 (0.420) | intergenic (+8/‑35) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 3427065 | 25 (0.230) | 10 (0.090) | 4/510 | 11.7 | 29.3% | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913 | = 3427068 | 24 (0.230) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913 | 225468 = | 58 (0.530) | 10 (0.090) | 4/510 | 11.7 | 16.5% | intergenic (+11/‑32) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913 | 4037225 = | 45 (0.420) | intergenic (+8/‑35) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||